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The map label for this gene is napC [H]

Identifier: 94312989

GI number: 94312989

Start: 626745

End: 627332

Strand: Reverse

Name: napC [H]

Synonym: Rmet_4061

Alternate gene names: 94312989

Gene position: 627332-626745 (Counterclockwise)

Preceding gene: 94312990

Following gene: 94312988

Centisome position: 24.31

GC content: 61.9

Gene sequence:

>588_bases
ATGTGGGACCTGATCAAGCGCTACTGGCATACCATCAACCGCCCCAGTGCCTACTTCAGCCTGGGATTCCTGACCCTGGG
CGGCTTCATCGCCGGCGTGGTGTTCTGGGGCGCGTTCAACACGGCGCTGGAACTCACCAACACCGAGCAATTCTGCACCG
GCTGCCACGAGATGCGCGACAACGTCTACCAGGAACTGCAGGGCACGATCCACTTCACCAACCGCAGCGGCGTGCGCGCC
AAATGCTCGGACTGCCACGTGCCGCACAACTGGACCGACAAGATGGCGCGCAAGATGCAGGCGTCGAAGGAAGTCTGGGC
CAAGATCTTCGGTACCGTGGACACGCGCGAGAAGTTCCAGGCGCACCGGCTGGAGCTGGCGCAGCACGAATGGGCCCGCT
TCAAGGCCAACGATTCGCTCGAATGCCGCAATTGCCACGACTACCAGTCGATGGACTTCACGCGCCAGAGCCCGCGCGCG
CAGGCCATGCACTCGACCTATCTGGCCAACAAGGAAAAGACCTGCATCGATTGCCACAAGGGGATCGCCCACCATCTGCC
TGACATCTCCAAGGCCGAGGAGCAATAG

Upstream 100 bases:

>100_bases
CCAAGCCACTGGTGAACAACACGTTCGTCGATGTGGAGGCGATCCTCAAACGCAGTGGCGGCACCAAGGGTGCCAAATAA
CCAGGCGACGGTGACCGATC

Downstream 100 bases:

>100_bases
CCTATGGCCGACGCGGTACTGGAGGCCCGCGAGCTTGGCGTCCGGCGCGGCCATTGCGCTATCTTCCGTGGCCTCGGCAT
TTCCCTGGCACCCGGCGACC

Product: Periplasmic nitrate reductase c-type cytochrome, NapC/NirT

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MWDLIKRYWHTINRPSAYFSLGFLTLGGFIAGVVFWGAFNTALELTNTEQFCTGCHEMRDNVYQELQGTIHFTNRSGVRA
KCSDCHVPHNWTDKMARKMQASKEVWAKIFGTVDTREKFQAHRLELAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRA
QAMHSTYLANKEKTCIDCHKGIAHHLPDISKAEEQ

Sequences:

>Translated_195_residues
MWDLIKRYWHTINRPSAYFSLGFLTLGGFIAGVVFWGAFNTALELTNTEQFCTGCHEMRDNVYQELQGTIHFTNRSGVRA
KCSDCHVPHNWTDKMARKMQASKEVWAKIFGTVDTREKFQAHRLELAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRA
QAMHSTYLANKEKTCIDCHKGIAHHLPDISKAEEQ
>Mature_195_residues
MWDLIKRYWHTINRPSAYFSLGFLTLGGFIAGVVFWGAFNTALELTNTEQFCTGCHEMRDNVYQELQGTIHFTNRSGVRA
KCSDCHVPHNWTDKMARKMQASKEVWAKIFGTVDTREKFQAHRLELAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRA
QAMHSTYLANKEKTCIDCHKGIAHHLPDISKAEEQ

Specific function: Mediates electron flow from quinones to the NapAB complex [H]

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788530, Length=190, Percent_Identity=56.3157894736842, Blast_Score=232, Evalue=1e-62,
Organism=Escherichia coli, GI1787230, Length=187, Percent_Identity=42.2459893048128, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1788181, Length=148, Percent_Identity=45.2702702702703, Blast_Score=145, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011031
- InterPro:   IPR005126
- InterPro:   IPR011885 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 22660; Mature: 22660

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWDLIKRYWHTINRPSAYFSLGFLTLGGFIAGVVFWGAFNTALELTNTEQFCTGCHEMRD
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHH
NVYQELQGTIHFTNRSGVRAKCSDCHVPHNWTDKMARKMQASKEVWAKIFGTVDTREKFQ
HHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AHRLELAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRAQAMHSTYLANKEKTCIDCHK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
GIAHHLPDISKAEEQ
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MWDLIKRYWHTINRPSAYFSLGFLTLGGFIAGVVFWGAFNTALELTNTEQFCTGCHEMRD
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHH
NVYQELQGTIHFTNRSGVRAKCSDCHVPHNWTDKMARKMQASKEVWAKIFGTVDTREKFQ
HHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AHRLELAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRAQAMHSTYLANKEKTCIDCHK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
GIAHHLPDISKAEEQ
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7639719 [H]