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The map label for this gene is yafC [C]

Identifier: 94312980

GI number: 94312980

Start: 618355

End: 619257

Strand: Reverse

Name: yafC [C]

Synonym: Rmet_4052

Alternate gene names: 94312980

Gene position: 619257-618355 (Counterclockwise)

Preceding gene: 94312981

Following gene: 94312979

Centisome position: 24.0

GC content: 66.78

Gene sequence:

>903_bases
GTGGATCGCCTGCAGGCCATGAAGACGTTCGTAACCGTGGTGGATACGGGGGGTTTTACGCCCGCGGCCCGGAAGCTCGA
CGTGTCGCTCTCGGTGGTCAGCCGGGTCATCACCGAGCTGGAGACACACCTGGGCGTGCGCCTGCTCACGCGCACCACGC
GGCTGGTGCGCCCGACGGCAACCGGCGCCACCTACTACGAAAACTGCCGCCGCATCCTGGCCGAGATCGAGGAAGCCGAG
CTTGCCACCACGGGCGCCCATGCCGCGCCGCGCGGCAAGCTGTCGATCACGGCTTCGGTCCTGTTCGGCCGTCGGTTCGT
CACGCCGATCGTGGTCGAGTATCTGCGACGCTATCCGGAAGTCGATGCCGAATGCCTGTTGATCGACCGCAACGTCAATT
TTGTCGAGGAAGGCATCGACGTCGGGGTCCGCATCGGCCCACTGCCCAGTTCGTCGTTACAGGCCATCCCGGTCGGTCGG
GTCCGCCGCGTGGTCTGCGCCGCGCCTGACTATCTGGCCCGGTTCGGCACGCCAGCCACGCCCGACGATCTTGCCCACCA
CACCGTCATCCAGACCACGGGTATCTCCACCCTGCCCGAATGGCGCTTCATGCGCGATGGGGAGACCGCGCCCACGCGCC
TGACGCCGCGCCTGGCCACCTCGACCAACGACTCGGCCATTGGCGCGGCGGTTGCGGGCTTCGGGCTGGCGGCGGTACTC
TCTTACCAGATCGCCGACGAAGTCCGCGACGGCAAGCTGCGCATCGTGCTCGATAATTTCGAGCAACCGCCGCTGCCGAT
CCACGTGATCCATCGCGAAGGCCGCCATGCCATGCACAAGGTGCGCGCCTTCATCGATCTGGCCGTTGATACGCTGCGCG
GCACGGCGTCGCTGAATCCGTAG

Upstream 100 bases:

>100_bases
CGCCGCGCTGTTCATCGCCTGTTGGGACCTGAACGCCCACGGTATCGACGAGAACGGCGATATCGGCAGCAACGGCCCCG
CCGCCTGACGGAGAACGACG

Downstream 100 bases:

>100_bases
GACGCCCCATCGTCGGGTTCTCCGCGGATTCTTCTCGAATCCGCAAGAGTCACTTCTTCCCCCGGCCGTTTTTCGTGGCA
CGGGACGCCCCTATATTTGA

Product: putative LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDRLQAMKTFVTVVDTGGFTPAARKLDVSLSVVSRVITELETHLGVRLLTRTTRLVRPTATGATYYENCRRILAEIEEAE
LATTGAHAAPRGKLSITASVLFGRRFVTPIVVEYLRRYPEVDAECLLIDRNVNFVEEGIDVGVRIGPLPSSSLQAIPVGR
VRRVVCAAPDYLARFGTPATPDDLAHHTVIQTTGISTLPEWRFMRDGETAPTRLTPRLATSTNDSAIGAAVAGFGLAAVL
SYQIADEVRDGKLRIVLDNFEQPPLPIHVIHREGRHAMHKVRAFIDLAVDTLRGTASLNP

Sequences:

>Translated_300_residues
MDRLQAMKTFVTVVDTGGFTPAARKLDVSLSVVSRVITELETHLGVRLLTRTTRLVRPTATGATYYENCRRILAEIEEAE
LATTGAHAAPRGKLSITASVLFGRRFVTPIVVEYLRRYPEVDAECLLIDRNVNFVEEGIDVGVRIGPLPSSSLQAIPVGR
VRRVVCAAPDYLARFGTPATPDDLAHHTVIQTTGISTLPEWRFMRDGETAPTRLTPRLATSTNDSAIGAAVAGFGLAAVL
SYQIADEVRDGKLRIVLDNFEQPPLPIHVIHREGRHAMHKVRAFIDLAVDTLRGTASLNP
>Mature_300_residues
MDRLQAMKTFVTVVDTGGFTPAARKLDVSLSVVSRVITELETHLGVRLLTRTTRLVRPTATGATYYENCRRILAEIEEAE
LATTGAHAAPRGKLSITASVLFGRRFVTPIVVEYLRRYPEVDAECLLIDRNVNFVEEGIDVGVRIGPLPSSSLQAIPVGR
VRRVVCAAPDYLARFGTPATPDDLAHHTVIQTTGISTLPEWRFMRDGETAPTRLTPRLATSTNDSAIGAAVAGFGLAAVL
SYQIADEVRDGKLRIVLDNFEQPPLPIHVIHREGRHAMHKVRAFIDLAVDTLRGTASLNP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=32.6315789473684, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=32.0819112627986, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI145693193, Length=303, Percent_Identity=27.7227722772277, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=30.4964539007092, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=32.404181184669, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=26.4808362369338, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI87081978, Length=261, Percent_Identity=29.1187739463602, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=29.6774193548387, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786448, Length=258, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=239, Percent_Identity=24.6861924686192, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788748, Length=157, Percent_Identity=35.031847133758, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=282, Percent_Identity=21.9858156028369, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=90, Percent_Identity=38.8888888888889, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32795; Mature: 32795

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLQAMKTFVTVVDTGGFTPAARKLDVSLSVVSRVITELETHLGVRLLTRTTRLVRPTA
CCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TGATYYENCRRILAEIEEAELATTGAHAAPRGKLSITASVLFGRRFVTPIVVEYLRRYPE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
VDAECLLIDRNVNFVEEGIDVGVRIGPLPSSSLQAIPVGRVRRVVCAAPDYLARFGTPAT
CCCEEEEEECCCHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCC
PDDLAHHTVIQTTGISTLPEWRFMRDGETAPTRLTPRLATSTNDSAIGAAVAGFGLAAVL
HHHHHHHHEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SYQIADEVRDGKLRIVLDNFEQPPLPIHVIHREGRHAMHKVRAFIDLAVDTLRGTASLNP
HHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDRLQAMKTFVTVVDTGGFTPAARKLDVSLSVVSRVITELETHLGVRLLTRTTRLVRPTA
CCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TGATYYENCRRILAEIEEAELATTGAHAAPRGKLSITASVLFGRRFVTPIVVEYLRRYPE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
VDAECLLIDRNVNFVEEGIDVGVRIGPLPSSSLQAIPVGRVRRVVCAAPDYLARFGTPAT
CCCEEEEEECCCHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCC
PDDLAHHTVIQTTGISTLPEWRFMRDGETAPTRLTPRLATSTNDSAIGAAVAGFGLAAVL
HHHHHHHHEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SYQIADEVRDGKLRIVLDNFEQPPLPIHVIHREGRHAMHKVRAFIDLAVDTLRGTASLNP
HHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]