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The map label for this gene is scd

Identifier: 94311807

GI number: 94311807

Start: 3125116

End: 3126354

Strand: Reverse

Name: scd

Synonym: Rmet_2875

Alternate gene names: NA

Gene position: 3126354-3125116 (Counterclockwise)

Preceding gene: 94311808

Following gene: 94311806

Centisome position: 79.59

GC content: 61.02

Gene sequence:

>1239_bases
ATGGTAGTGCCGCACTGCATCCCTCGTTTTTTAGACGGAGAACACAGTTTGTTCGACTCAATTCTTGATTGGGCCGCCAA
CGGCCTCGCCAACTGGTCCTGGTGGGAGATCGTGATCTACACGCTCGTGATGACGCACATCACGATCGCCGGCGTGACTA
TTTTCCTGCACCGCTGCATGGCGCACCGGTCGCTGGACCTGCATCCGATCGCCCAGCATTTCTTCCGTTTCTGGCTGTGG
ATGACCACGGGCATGGTGACCAAGGAGTGGACCGCGATTCACCGCAAGCACCACGCCAAGTGCGAAACCGAAGACGATCC
GCACAGCCCGCAGACCCGCGGCATCCGCAAGGTGCTGCTGGAAGGCGCCGAGCTGTATCGCGCCGAGGCCAAGAATAAGG
AAACCATCACCAAGTTCGGCCACGGCACGCCCGATGACTGGATCGAGCGCAATTTGTACTCGCGCTTCTCCTGGCAAGGC
GTAGCGCTGATGCTGATCATCGACCTGGCCCTGTTCGGCCTGGTCGGCATGTCCGTGTGGGCAGTGCAGATGCTCTGGAT
CCCGATCCATGCCGCCGGCATCATCAACGGCCTGGGCCACTACTGGGGCTATCGCAACTACGACTGCGAGGACGCATCGA
CCAACGTGTCGCCGTGGGGCTTCATCATCGGCGGTGAAGAGCTGCACAACAACCACCACACGTACCCGACGTCGGCCAAG
TTCTCGATCAAGTGGTATGAGATCGACGTGGGTTGGTGGTACATCCGCGCGATGCAGTCGGTGGGCCTGGCCAAGGTCAA
GAAGATCCCGCCCAAGGCTCGCCTGGTGGAGGCTCGTCCGGTGGATCACAACACGCTGGAAGCGATCATCGCTAACCGCT
ACGACGTGATGGCCCGCTATGCCAAGACGCTGAAGTCCGCCTACAAGGATGAACTGCGCAAGCACAAGGAAGGCAATACG
CCCGAGTACTCGAGCTTCAAGCCGGCCCGCAAGTGGTTCCACCGCGAGGAAACCAAGCTGGCTGCGCCGCAACGTCAGCA
ATTGGCGACCATCGTCGAGCAAAACAAGATGCTGAGCACGTTCGTGGAAATGCGCCGCGAACTGGCTGTGATCTGGGGTC
GCTCGAACCTGACGCGCGAGCAACTGCTGGCTCAGCTGCAGGCCTGGTGCCATCGCGCCGAAGCCAGCGGCATCCAGGCG
CTGCAGGAGTTTTCGCTGCGCCTGCGCCGGTACGCCTGA

Upstream 100 bases:

>100_bases
TCGGCCCGGCTCCTGCCACGTACGCAGGATTGCGCCAGCGCCAGAAAGCTATCGCAATCGTTGAATTTGCAGTCTTTTTT
CTGCGCGTTTGGTGCGTTGC

Downstream 100 bases:

>100_bases
TACAATCGCCGACGCGCCCGTCATGGCTACAAAGCCCCGCCCCAGGCGGGGCTTTTCTTTTGGCTAAACTTCTCCATGTG
ATGGCACAGACCGCGCGTTC

Product: Fatty-acid desaturase

Products: NA

Alternate protein names: Stearoyl-CoA 9-Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Fatty Acid Desaturase Family Protein; Fatty Acid Desaturase Subfamily; Stearoyl-CoA Desaturase; Acyl-CoA Desaturase; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Delta-9 Acyl-Lipid Desaturase; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Fatty Acid Desaturase Family Proteiin; Stearoyl-CoA Desaturase Oxidoreductase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Transmembrane Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Desaturase-Like; Stearoyl-CoA-9-Desaturase; Eucaryotic Stearoyl-CoA 9-Desaturase; Delta 9 Acyl-Lipid Desaturase; Stearoyl-CoA Desaturase Oxidoreductase Protein; Fatty Acid Desaturase Family

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MVVPHCIPRFLDGEHSLFDSILDWAANGLANWSWWEIVIYTLVMTHITIAGVTIFLHRCMAHRSLDLHPIAQHFFRFWLW
MTTGMVTKEWTAIHRKHHAKCETEDDPHSPQTRGIRKVLLEGAELYRAEAKNKETITKFGHGTPDDWIERNLYSRFSWQG
VALMLIIDLALFGLVGMSVWAVQMLWIPIHAAGIINGLGHYWGYRNYDCEDASTNVSPWGFIIGGEELHNNHHTYPTSAK
FSIKWYEIDVGWWYIRAMQSVGLAKVKKIPPKARLVEARPVDHNTLEAIIANRYDVMARYAKTLKSAYKDELRKHKEGNT
PEYSSFKPARKWFHREETKLAAPQRQQLATIVEQNKMLSTFVEMRRELAVIWGRSNLTREQLLAQLQAWCHRAEASGIQA
LQEFSLRLRRYA

Sequences:

>Translated_412_residues
MVVPHCIPRFLDGEHSLFDSILDWAANGLANWSWWEIVIYTLVMTHITIAGVTIFLHRCMAHRSLDLHPIAQHFFRFWLW
MTTGMVTKEWTAIHRKHHAKCETEDDPHSPQTRGIRKVLLEGAELYRAEAKNKETITKFGHGTPDDWIERNLYSRFSWQG
VALMLIIDLALFGLVGMSVWAVQMLWIPIHAAGIINGLGHYWGYRNYDCEDASTNVSPWGFIIGGEELHNNHHTYPTSAK
FSIKWYEIDVGWWYIRAMQSVGLAKVKKIPPKARLVEARPVDHNTLEAIIANRYDVMARYAKTLKSAYKDELRKHKEGNT
PEYSSFKPARKWFHREETKLAAPQRQQLATIVEQNKMLSTFVEMRRELAVIWGRSNLTREQLLAQLQAWCHRAEASGIQA
LQEFSLRLRRYA
>Mature_412_residues
MVVPHCIPRFLDGEHSLFDSILDWAANGLANWSWWEIVIYTLVMTHITIAGVTIFLHRCMAHRSLDLHPIAQHFFRFWLW
MTTGMVTKEWTAIHRKHHAKCETEDDPHSPQTRGIRKVLLEGAELYRAEAKNKETITKFGHGTPDDWIERNLYSRFSWQG
VALMLIIDLALFGLVGMSVWAVQMLWIPIHAAGIINGLGHYWGYRNYDCEDASTNVSPWGFIIGGEELHNNHHTYPTSAK
FSIKWYEIDVGWWYIRAMQSVGLAKVKKIPPKARLVEARPVDHNTLEAIIANRYDVMARYAKTLKSAYKDELRKHKEGNT
PEYSSFKPARKWFHREETKLAAPQRQQLATIVEQNKMLSTFVEMRRELAVIWGRSNLTREQLLAQLQAWCHRAEASGIQA
LQEFSLRLRRYA

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47903; Mature: 47903

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00223 ANNEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVVPHCIPRFLDGEHSLFDSILDWAANGLANWSWWEIVIYTLVMTHITIAGVTIFLHRCM
CCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHRSLDLHPIAQHFFRFWLWMTTGMVTKEWTAIHRKHHAKCETEDDPHSPQTRGIRKVLL
HHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
EGAELYRAEAKNKETITKFGHGTPDDWIERNLYSRFSWQGVALMLIIDLALFGLVGMSVW
HHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AVQMLWIPIHAAGIINGLGHYWGYRNYDCEDASTNVSPWGFIIGGEELHNNHHTYPTSAK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCE
FSIKWYEIDVGWWYIRAMQSVGLAKVKKIPPKARLVEARPVDHNTLEAIIANRYDVMARY
EEEEEEEEECHHHHHHHHHHHCHHHHHCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHH
AKTLKSAYKDELRKHKEGNTPEYSSFKPARKWFHREETKLAAPQRQQLATIVEQNKMLST
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FVEMRRELAVIWGRSNLTREQLLAQLQAWCHRAEASGIQALQEFSLRLRRYA
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA