Click here to switch to the map view.

The map label for this gene is epsD [H]

Identifier: 94311649

GI number: 94311649

Start: 2950833

End: 2952002

Strand: Direct

Name: epsD [H]

Synonym: Rmet_2717

Alternate gene names: 94311649

Gene position: 2950833-2952002 (Clockwise)

Preceding gene: 94311643

Following gene: 94311650

Centisome position: 75.12

GC content: 68.55

Gene sequence:

>1170_bases
GTGCTTCTTTACCAACTTTTTCCCGCGTTCGTGCAGAACCTGCCCTCCCCCCGGCCCCGCGTCGCGTACGTCATTACCAA
TACCGAGATTGGCGGGGCGCAGTCGCATGTCGCAGACCTGCTGCGCGCACTGCGCGGCCGGATCGACGCCACCGTACTGG
CGGGCGGGGATGGTCCCCTGTTCGCAACCGCGCAGGCCGCTGGCGCCGAAACCGTCCGGCTCTCGCTGCTCGACAATGCC
ATGTCGGTAGGCAAGGCCATCGCGACACTTCGCCAACTGAAAGCCGCCCTGCGCCACGCGGCGCCGGACCTGATTCACGT
CCATAGCGCCAAGGCAGGCGCGCTGGGGCGGATTGCCGCGTGGATGCTCGGGGTGCCCGTTGTCTACACGGTCCACGGCT
TCGCCTTCAAGCCAGCGGCTCCGCTGCACCGGCGCATGGCCGCACGCATCGCGGAGTGGTGCCTTGCGCCGTTGACCACG
CGGCTGATCTGCGTGGCCGACTCGGAGCGTGCCCTGGCCGCGGCGCTGCCGTTGCCGGCAGCACGTGTCAGCGTGATCCA
CAACGGTATTCCCGATACCGAGGCTCGCGCGGAACCAGGTGGGCCGCTACGCCGCATCGTCATGGTGGCGCGCTTCGCCG
CGCCGAAACGCCCGGACCTCGTCATCCGGGCCTTTGCCCGTGCGAACCTGACCGATTGTGAACTGGTGATCGCCGGCGAT
GGCCCCACCCGCGACGCCATGCGCCAGCTTGCCGATGAGCTGGCGCCCGGGCGTATCCGCCTGCCAGGAAACGTCGACGA
CATCGCCAGCCTGCTCGCCTCGGCACAGATCTTCGTGTTGGCCTCCGATCATGAGGGACTGCCGGTCTCGATTCTCGAGG
CGATGCGGGCCGGGCTCCCGGTGATCGCATCGGATTTGCCCGGTATTCGGGAGGAATTCGGCAAGGCGCAGGCTGGCCTG
CTGGTGCCTGGCGATGATGAAGCTGCGATGGCCGAAGCCTTGAGCACCCTTGCCCGCGCCCCCGCCAAGCGGACGGCTAT
GGGCCAATCGGCCCGGGCGCGCTGGAGCGATGCGTTCGGCGTTGACACCATGGCCGACGCCACCTGGCAGGTTTACCAGC
GTGTGCTCGGGCCTGGGCAGACAGCCGCGATGCCGGCCGGGGGAGCCTGA

Upstream 100 bases:

>100_bases
GCCAGTTTATAATCCCTCGATCACCCAAACCCGGGCGATCCGTGCGCCACGCCACGGATCTGGCAACGCCCGTTCTTGGC
CATGTGCGGGGCGCTTGCCA

Downstream 100 bases:

>100_bases
GATGAGCAACAAGCAAGCCCGCCTCACCCATTCCCAGCGAAGCCCGGCCGCGAACACGCGCGGCTCCGAAACCGTGCGTC
GCGCCAGCCGGATGCTGTCC

Product: putative glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLLYQLFPAFVQNLPSPRPRVAYVITNTEIGGAQSHVADLLRALRGRIDATVLAGGDGPLFATAQAAGAETVRLSLLDNA
MSVGKAIATLRQLKAALRHAAPDLIHVHSAKAGALGRIAAWMLGVPVVYTVHGFAFKPAAPLHRRMAARIAEWCLAPLTT
RLICVADSERALAAALPLPAARVSVIHNGIPDTEARAEPGGPLRRIVMVARFAAPKRPDLVIRAFARANLTDCELVIAGD
GPTRDAMRQLADELAPGRIRLPGNVDDIASLLASAQIFVLASDHEGLPVSILEAMRAGLPVIASDLPGIREEFGKAQAGL
LVPGDDEAAMAEALSTLARAPAKRTAMGQSARARWSDAFGVDTMADATWQVYQRVLGPGQTAAMPAGGA

Sequences:

>Translated_389_residues
MLLYQLFPAFVQNLPSPRPRVAYVITNTEIGGAQSHVADLLRALRGRIDATVLAGGDGPLFATAQAAGAETVRLSLLDNA
MSVGKAIATLRQLKAALRHAAPDLIHVHSAKAGALGRIAAWMLGVPVVYTVHGFAFKPAAPLHRRMAARIAEWCLAPLTT
RLICVADSERALAAALPLPAARVSVIHNGIPDTEARAEPGGPLRRIVMVARFAAPKRPDLVIRAFARANLTDCELVIAGD
GPTRDAMRQLADELAPGRIRLPGNVDDIASLLASAQIFVLASDHEGLPVSILEAMRAGLPVIASDLPGIREEFGKAQAGL
LVPGDDEAAMAEALSTLARAPAKRTAMGQSARARWSDAFGVDTMADATWQVYQRVLGPGQTAAMPAGGA
>Mature_389_residues
MLLYQLFPAFVQNLPSPRPRVAYVITNTEIGGAQSHVADLLRALRGRIDATVLAGGDGPLFATAQAAGAETVRLSLLDNA
MSVGKAIATLRQLKAALRHAAPDLIHVHSAKAGALGRIAAWMLGVPVVYTVHGFAFKPAAPLHRRMAARIAEWCLAPLTT
RLICVADSERALAAALPLPAARVSVIHNGIPDTEARAEPGGPLRRIVMVARFAAPKRPDLVIRAFARANLTDCELVIAGD
GPTRDAMRQLADELAPGRIRLPGNVDDIASLLASAQIFVLASDHEGLPVSILEAMRAGLPVIASDLPGIREEFGKAQAGL
LVPGDDEAAMAEALSTLARAPAKRTAMGQSARARWSDAFGVDTMADATWQVYQRVLGPGQTAAMPAGGA

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Drosophila melanogaster, GI24654571, Length=310, Percent_Identity=26.7741935483871, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40859; Mature: 40859

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLYQLFPAFVQNLPSPRPRVAYVITNTEIGGAQSHVADLLRALRGRIDATVLAGGDGPL
CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCE
FATAQAAGAETVRLSLLDNAMSVGKAIATLRQLKAALRHAAPDLIHVHSAKAGALGRIAA
EEEHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
WMLGVPVVYTVHGFAFKPAAPLHRRMAARIAEWCLAPLTTRLICVADSERALAAALPLPA
HHHCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCH
ARVSVIHNGIPDTEARAEPGGPLRRIVMVARFAAPKRPDLVIRAFARANLTDCELVIAGD
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECC
GPTRDAMRQLADELAPGRIRLPGNVDDIASLLASAQIFVLASDHEGLPVSILEAMRAGLP
CCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCC
VIASDLPGIREEFGKAQAGLLVPGDDEAAMAEALSTLARAPAKRTAMGQSARARWSDAFG
EEHHCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCCC
VDTMADATWQVYQRVLGPGQTAAMPAGGA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLLYQLFPAFVQNLPSPRPRVAYVITNTEIGGAQSHVADLLRALRGRIDATVLAGGDGPL
CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCE
FATAQAAGAETVRLSLLDNAMSVGKAIATLRQLKAALRHAAPDLIHVHSAKAGALGRIAA
EEEHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
WMLGVPVVYTVHGFAFKPAAPLHRRMAARIAEWCLAPLTTRLICVADSERALAAALPLPA
HHHCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCH
ARVSVIHNGIPDTEARAEPGGPLRRIVMVARFAAPKRPDLVIRAFARANLTDCELVIAGD
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECC
GPTRDAMRQLADELAPGRIRLPGNVDDIASLLASAQIFVLASDHEGLPVSILEAMRAGLP
CCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCC
VIASDLPGIREEFGKAQAGLLVPGDDEAAMAEALSTLARAPAKRTAMGQSARARWSDAFG
EEHHCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCCC
VDTMADATWQVYQRVLGPGQTAAMPAGGA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]