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The map label for this gene is hfq [H]

Identifier: 94311039

GI number: 94311039

Start: 2282348

End: 2282587

Strand: Reverse

Name: hfq [H]

Synonym: Rmet_2101

Alternate gene names: 94311039

Gene position: 2282587-2282348 (Counterclockwise)

Preceding gene: 94311040

Following gene: 94311038

Centisome position: 58.11

GC content: 53.33

Gene sequence:

>240_bases
ATGAGCAACAAAGGGCAATTGCTACAAGACCCGTTTCTGAATGCGCTGCGCAAAGAGCACGTGCCAGTTTCCATCTACCT
CGTCAATGGCATCAAGCTGCAAGGCAATATCGAGTCGTTCGACCAGTACGTCGTCCTGCTGCGCAACACTGTGACGCAGA
TGGTTTACAAGCATGCGATTTCCACTGTCGTGCCGGCGCGCGCCGTCAATTTCCGTGTGGATGATTCTTCCGAGAGCTGA

Upstream 100 bases:

>100_bases
CGTTTTTGATCTTTTTTTGGCGCATCTTGCGCCAACTGGCTTGAACCGGGGATTTTCGTCCCCATGATCCATCACTAAAT
CTATAAATTTGGAGTGTGCC

Downstream 100 bases:

>100_bases
TTTTTCCTCTCCCATGGGCGGCCGCATCTCCGTGCGGCCGTCGCATCGCGTGCCTCGGCTTGTCAGCCGTCTTTTCCGCC
CGGAACGGGCGAACCCTTCC

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARAVNFRVDDSSES

Sequences:

>Translated_79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARAVNFRVDDSSES
>Mature_78_residues
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARAVNFRVDDSSES

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=73, Percent_Identity=76.7123287671233, Blast_Score=121, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8904; Mature: 8773

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCCHHHHHHHHHHHCCCCEEEEEEECEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARAVNFRVDDSSES
HHHCCCCEEEEEECCCCCC
>Mature Secondary Structure 
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCHHHHHHHHHHHCCCCEEEEEEECEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARAVNFRVDDSSES
HHHCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA