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The map label for this gene is dppB [H]

Identifier: 94310871

GI number: 94310871

Start: 2102049

End: 2102999

Strand: Direct

Name: dppB [H]

Synonym: Rmet_1933

Alternate gene names: 94310871

Gene position: 2102049-2102999 (Clockwise)

Preceding gene: 94310870

Following gene: 94310872

Centisome position: 53.51

GC content: 62.99

Gene sequence:

>951_bases
ATGACTTACCTGCTTCGCCGCATCGCATATGCCCTGCCGATCCTGCTTGGGGTCGCCCTGCTCTGCTTCTCGCTGGTCCA
CATTGCCCCCGGCGATCCCCTTGTGTCGGTGCTGCCACCCGATGCATCCGAGGATCTGCGGCGACAACTGACCGCGCTGT
ACGGGTTCGACAAGCCGTTTCTCGAGCAATTCCTCCATTGGCTGCTGCGCGCGCTGCATGGGGACCTCGGTACGTCGATC
GCCACGAACCGGCCCGTGATGAGCGAGGTGTCGGTAGCCGTCGTCAACTCCGTGCGCCTGGCCGCCGTCGCCACGCTGAT
CGGCTTCACGTTCGGCTGCCTGTTCGGCTTCGTGGCCGGCTACCTGCGCGATTCGGTGCCCGATCGTGTGGCGTCGTTCC
TGTCGGTACTGGGCGTCAGCATTCCCCATTACTGGCTCGGCATGGTGCTGGTGATTGCGTTCTCCGTGCTTCTGGGATGG
CTGCCGGCCACCGGCGCCGGCCCTAACGGCTCGGGCGACTGGGGTTGGGATTGGGAACACATCCAGTACATGCTGTTGCC
TGCGGTCACGATGTCGGTGATTCCGATGGGCATCGTGGCGCGCACCATCCGCGCACTGGTGGCCGAGATCCTGTCCAACG
AGTTCATTGCCGGCCTGCGTGCGCGCGGATTGTCGGACCTTGCCGTATTCCGTCACGTGGTCAAGAACGTTACGCCGACG
GCGCTCTCGGTCATGGGCCTGCAACTGGGCTATCTGCTTGGCGGCTCGATTCTGATCGAAACGGTGTTCTCCTGGCCAGG
CACCGGCTTCCTGCTGAACTCCGCCATTTTCCAGCGCGATTTCCCGTTGTTGCAGGGCACGATTCTCGTCCTGGCCGTGT
TCTTCGTGATGCTGAACCTGCTGGTCGACGCGTTGCAGACATTGTTCGACCCCCGTATCCAACGCAACTGA

Upstream 100 bases:

>100_bases
TGTCTATCGATTGACGGACTCGCCGCAGTGCCCTCCTCCGCGGAAGGGGGCACTTTCCCGCGCCAACGTATTTGCCTATT
CCGCAAGCCGGCCATAGACC

Downstream 100 bases:

>100_bases
GGACGCCACGATGGAAATGACATTGAACAAGGCCGTGGCACCGCTTCCCGTGGAGCGTTCACCCGGATACTGGACCACGG
TCTGCCGCCGGCTGCTGCGC

Product: PepT family ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MTYLLRRIAYALPILLGVALLCFSLVHIAPGDPLVSVLPPDASEDLRRQLTALYGFDKPFLEQFLHWLLRALHGDLGTSI
ATNRPVMSEVSVAVVNSVRLAAVATLIGFTFGCLFGFVAGYLRDSVPDRVASFLSVLGVSIPHYWLGMVLVIAFSVLLGW
LPATGAGPNGSGDWGWDWEHIQYMLLPAVTMSVIPMGIVARTIRALVAEILSNEFIAGLRARGLSDLAVFRHVVKNVTPT
ALSVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDFPLLQGTILVLAVFFVMLNLLVDALQTLFDPRIQRN

Sequences:

>Translated_316_residues
MTYLLRRIAYALPILLGVALLCFSLVHIAPGDPLVSVLPPDASEDLRRQLTALYGFDKPFLEQFLHWLLRALHGDLGTSI
ATNRPVMSEVSVAVVNSVRLAAVATLIGFTFGCLFGFVAGYLRDSVPDRVASFLSVLGVSIPHYWLGMVLVIAFSVLLGW
LPATGAGPNGSGDWGWDWEHIQYMLLPAVTMSVIPMGIVARTIRALVAEILSNEFIAGLRARGLSDLAVFRHVVKNVTPT
ALSVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDFPLLQGTILVLAVFFVMLNLLVDALQTLFDPRIQRN
>Mature_315_residues
TYLLRRIAYALPILLGVALLCFSLVHIAPGDPLVSVLPPDASEDLRRQLTALYGFDKPFLEQFLHWLLRALHGDLGTSIA
TNRPVMSEVSVAVVNSVRLAAVATLIGFTFGCLFGFVAGYLRDSVPDRVASFLSVLGVSIPHYWLGMVLVIAFSVLLGWL
PATGAGPNGSGDWGWDWEHIQYMLLPAVTMSVIPMGIVARTIRALVAEILSNEFIAGLRARGLSDLAVFRHVVKNVTPTA
LSVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDFPLLQGTILVLAVFFVMLNLLVDALQTLFDPRIQRN

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=34.6031746031746, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1789888, Length=322, Percent_Identity=35.4037267080745, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=33.5311572700297, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1787761, Length=339, Percent_Identity=32.7433628318584, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787497, Length=318, Percent_Identity=28.3018867924528, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=27.8388278388278, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788504, Length=359, Percent_Identity=23.6768802228412, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34447; Mature: 34316

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYLLRRIAYALPILLGVALLCFSLVHIAPGDPLVSVLPPDASEDLRRQLTALYGFDKPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHH
LEQFLHWLLRALHGDLGTSIATNRPVMSEVSVAVVNSVRLAAVATLIGFTFGCLFGFVAG
HHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLRDSVPDRVASFLSVLGVSIPHYWLGMVLVIAFSVLLGWLPATGAGPNGSGDWGWDWEH
HHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
IQYMLLPAVTMSVIPMGIVARTIRALVAEILSNEFIAGLRARGLSDLAVFRHVVKNVTPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHH
ALSVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDFPLLQGTILVLAVFFVMLNL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LVDALQTLFDPRIQRN
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TYLLRRIAYALPILLGVALLCFSLVHIAPGDPLVSVLPPDASEDLRRQLTALYGFDKPF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHH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HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]