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The map label for this gene is ycaN [H]

Identifier: 94310835

GI number: 94310835

Start: 2064741

End: 2065646

Strand: Reverse

Name: ycaN [H]

Synonym: Rmet_1897

Alternate gene names: 94310835

Gene position: 2065646-2064741 (Counterclockwise)

Preceding gene: 94310837

Following gene: 94310832

Centisome position: 52.59

GC content: 64.02

Gene sequence:

>906_bases
ATGCACAGAACAGGAATGACCGAACTGGAAGCGGTGCTGGCCGTGGCGCGCCGCAACAGCTTTCGTGGTGCCGCGCAGGA
GCTGGGCATGTCCACCACCGCCGTGAGCAGCGCGGTGGCTGGACTGGAGGCGCGCCTGAAGGTGCGTCTGTTCAATCGAT
CGACGCGCAGCGTTGCCCTGACTGACGCCGGCTTGCGGTATGTGGAACGCATTGCCCCCGCGCTGGCGGCAATCAAGAGC
GCAGGCGAGGAAGCCGGCAGCGGCCCGGACGTGCCCAGTGGCACGCTGCGCATCAATGCGCCGCAGGGCGCGGCAAATTT
GCTGCTGGCGCCGCTTTTCAACGTGTACGCGCAGCGCTATCCCGATGTGCGGATAGACATCGTGAGCGAGTCGCGCATGA
TCGACGTCGTGGCAGAAGGGTTCGATGCAGGCATCCGCCTGGCCGAATCCGTCCCGCAAGACATGATCGCCGTGCCCCTT
TCGCGCGACGTCCGCATGCTTGTGGTGGCAACGCCTGCATACCTGGAACACCACGGTACACCCAGACACCCACGCGATCT
GCTCCAGCATCGGAGCATCGGCATGCGCATGTCCCACGGCGGCATCTATCAGTGGGAGCTGGAGCACAAGGGGCAGAAGT
TGCAGATGGACTTGCCCGTTCGCATTGCGCTCAACGAGATGCCGGCCATCAGGCAGGCGCTACTGCTCGGACTGGGCATC
GGCTTTATCTCCGAGTGGTTCATCGAAGACGAACTGAAGACCGGTGCCCTGGTGCCCGTGCTGGCTCCGTGGTGCCCGTC
GTTTGGCGGGCTGAGACTCTATTACTCAGGCCATCGTTTCGTGCCCGCACGGTTGCGCGCGCTTGTCAGCCTGGTCCATG
AGCTGCGTCTGGCTGAAGCGCAGTAG

Upstream 100 bases:

>100_bases
GACCTCTCTTCGAGTGGGATGCCACGTAGTCTAGGATTGGTTTATTGTTCTGATAAGCAGTGTTATGGTTGATGATGCAT
CCTTAAATTCAGGATAATCC

Downstream 100 bases:

>100_bases
CGATTGGTAGCCCGTTTCCGGGGGACCAGTTCTCGCTGGCGACTTCGATCAGATTGATGAACACGTCGGCCGGTTTGATG
CCGGAACCGGCCTCGAGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MHRTGMTELEAVLAVARRNSFRGAAQELGMSTTAVSSAVAGLEARLKVRLFNRSTRSVALTDAGLRYVERIAPALAAIKS
AGEEAGSGPDVPSGTLRINAPQGAANLLLAPLFNVYAQRYPDVRIDIVSESRMIDVVAEGFDAGIRLAESVPQDMIAVPL
SRDVRMLVVATPAYLEHHGTPRHPRDLLQHRSIGMRMSHGGIYQWELEHKGQKLQMDLPVRIALNEMPAIRQALLLGLGI
GFISEWFIEDELKTGALVPVLAPWCPSFGGLRLYYSGHRFVPARLRALVSLVHELRLAEAQ

Sequences:

>Translated_301_residues
MHRTGMTELEAVLAVARRNSFRGAAQELGMSTTAVSSAVAGLEARLKVRLFNRSTRSVALTDAGLRYVERIAPALAAIKS
AGEEAGSGPDVPSGTLRINAPQGAANLLLAPLFNVYAQRYPDVRIDIVSESRMIDVVAEGFDAGIRLAESVPQDMIAVPL
SRDVRMLVVATPAYLEHHGTPRHPRDLLQHRSIGMRMSHGGIYQWELEHKGQKLQMDLPVRIALNEMPAIRQALLLGLGI
GFISEWFIEDELKTGALVPVLAPWCPSFGGLRLYYSGHRFVPARLRALVSLVHELRLAEAQ
>Mature_301_residues
MHRTGMTELEAVLAVARRNSFRGAAQELGMSTTAVSSAVAGLEARLKVRLFNRSTRSVALTDAGLRYVERIAPALAAIKS
AGEEAGSGPDVPSGTLRINAPQGAANLLLAPLFNVYAQRYPDVRIDIVSESRMIDVVAEGFDAGIRLAESVPQDMIAVPL
SRDVRMLVVATPAYLEHHGTPRHPRDLLQHRSIGMRMSHGGIYQWELEHKGQKLQMDLPVRIALNEMPAIRQALLLGLGI
GFISEWFIEDELKTGALVPVLAPWCPSFGGLRLYYSGHRFVPARLRALVSLVHELRLAEAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=299, Percent_Identity=37.4581939799331, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=31.7857142857143, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=31.2714776632302, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI87081978, Length=256, Percent_Identity=30.859375, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789440, Length=263, Percent_Identity=28.8973384030418, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1789639, Length=243, Percent_Identity=28.3950617283951, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI145693193, Length=280, Percent_Identity=28.9285714285714, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI157672245, Length=223, Percent_Identity=28.2511210762332, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=27.0114942528736, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786448, Length=274, Percent_Identity=24.8175182481752, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=132, Percent_Identity=28.030303030303, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32938; Mature: 32938

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRTGMTELEAVLAVARRNSFRGAAQELGMSTTAVSSAVAGLEARLKVRLFNRSTRSVAL
CCCCCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEE
TDAGLRYVERIAPALAAIKSAGEEAGSGPDVPSGTLRINAPQGAANLLLAPLFNVYAQRY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC
PDVRIDIVSESRMIDVVAEGFDAGIRLAESVPQDMIAVPLSRDVRMLVVATPAYLEHHGT
CCEEEEEECCCHHHHHHHHCHHHHHHHHHHCCHHHEECCCCCCCEEEEEECCHHHHCCCC
PRHPRDLLQHRSIGMRMSHGGIYQWELEHKGQKLQMDLPVRIALNEMPAIRQALLLGLGI
CCCHHHHHHHHHCCEEECCCCEEEEEECCCCCEEEECCCEEEEECCCHHHHHHHHHHHHH
GFISEWFIEDELKTGALVPVLAPWCPSFGGLRLYYSGHRFVPARLRALVSLVHELRLAEA
HHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEECCCEECHHHHHHHHHHHHHHHHHCC
Q
C
>Mature Secondary Structure
MHRTGMTELEAVLAVARRNSFRGAAQELGMSTTAVSSAVAGLEARLKVRLFNRSTRSVAL
CCCCCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEE
TDAGLRYVERIAPALAAIKSAGEEAGSGPDVPSGTLRINAPQGAANLLLAPLFNVYAQRY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC
PDVRIDIVSESRMIDVVAEGFDAGIRLAESVPQDMIAVPLSRDVRMLVVATPAYLEHHGT
CCEEEEEECCCHHHHHHHHCHHHHHHHHHHCCHHHEECCCCCCCEEEEEECCHHHHCCCC
PRHPRDLLQHRSIGMRMSHGGIYQWELEHKGQKLQMDLPVRIALNEMPAIRQALLLGLGI
CCCHHHHHHHHHCCEEECCCCEEEEEECCCCCEEEECCCEEEEECCCHHHHHHHHHHHHH
GFISEWFIEDELKTGALVPVLAPWCPSFGGLRLYYSGHRFVPARLRALVSLVHELRLAEA
HHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEECCCEECHHHHHHHHHHHHHHHHHCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]