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The map label for this gene is ygcN [C]

Identifier: 94310595

GI number: 94310595

Start: 1788170

End: 1789384

Strand: Reverse

Name: ygcN [C]

Synonym: Rmet_1653

Alternate gene names: 94310595

Gene position: 1789384-1788170 (Counterclockwise)

Preceding gene: 94310596

Following gene: 94310594

Centisome position: 45.55

GC content: 65.35

Gene sequence:

>1215_bases
GTGCCAAGTGCCCGGCACCCTCCCCCCTTCACTTTCACCTCATCCTGCCTTCACCCACGCACTGGATACTCCCGGCCATC
CAATCACCAAAGAGGAACCGAGATGGCGACGCGAACCCAGGACTTTGACCATGATGTGGTAATCGTCGGCGCGAGCTTTG
CAGGCGCTGCCTGCGCGCTGGCTGCGGCACGCGCGGGATTGCGCGTGGTAGTGCTTGAGCGAAAGACAGACCCCGGGAGC
AAGCTTCACACCACTGGCATCCTGGTCAAGGAGGCGGCCGAGCAGACATGGCTCGGCCGCGCTCCTGCCGATTGCCTGCG
ACGCATCGAGAAGGTTCACCTCTATTCGCCGGCGCTGCGCAGCCTCGCGTTGGCGGCGCCCGGTTACTACTTTCTCACCA
CCGATACGCCGAATCTGATGCGCTGGCTGGCCTCGGAGCTGGTAAATCACGGGGTCGACCTGCGTCTCGGCACCTCTTTC
AGTCAAGCGTCACGATCCGGTGCCGGATGGTCCGTGCCGGGCGTCGGCCGCACGCGGTACCTGGTAGGTGCCGACGGCGC
GAGGTCAAGGGTGGCCCAGATCGCCGGACTCGGGCAAGGTAACGCCTTCCTCTACGGCGTCGAATACGAGTTTGCCGGCC
TGCAACTCTCCGATCCAGATGCCCTGCATTGCTTCGCCAGCAAGCACTTCGCGCCTGGGTATATCGGTTGGGTGGCCCAG
AATCCCACCGGTGTGCAAGCTGGCCTGGCGCTGCGCCATGCGCCACGGCGTCGGGCAGCGCCGGATATCGACGGCTTTCT
TCGGCGTGTCCGGCACCTGCTCGGTGTACCGGAGGACGCGGCACCGACCACCACCCGTGCCGGCCTGATACCCTGTGGCG
GCCCGGTATATCCGTTGGCCCGGGATGGCGTACTGCTAACGGGCGATGCGGCTGGTATCGTGTCGCCGGTGACGGCCGGC
GGCATTCACGCGGCGTGGCGGCATGGCGAAGCTGTCGGGCGGGCCATTGCGGCGCACCTTCGGACCGGCGCCGCAACGCC
AGAGCAGGTGGCCGAACAGAGCGCGCCGCGTTTTCGGACCAAGCGGCTGCTACGTTGGGCGTTCGACCATTTCCAGTCGG
ATTGGGCGTTCGATGTCCTGTTGCATTCGGCGCCTTTGCGATGGGTCGCGGAACGCATCTATTTCCACAAACGCGGCGTC
GCGGCAGAGATTTAA

Upstream 100 bases:

>100_bases
GCCAACAGCATGAAGATTGCAGTACGGCTTCAACAAATCCAGTATCGCCTTCTTGTCGCTATATGCTGACGTGGAAGCGT
AGACTCCACTTCACAAATTC

Downstream 100 bases:

>100_bases
ACCTGATAGCGAGACTTGTGTAATGAAACAGCCAGCCGTACTTGTAGTGGAAGATGAATCAGCCATTGCGGACACGATTC
TGTACGCCCTACGCACGGAA

Product: putative membrane associated dehydrogenase (flavoprotein)

Products: NA

Alternate protein names: DGGGPL reductase 2; 2,3-di-O-geranylgeranylglyceryl phosphate reductase 2; Geranylgeranyl reductase 2; GGR 2 [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MPSARHPPPFTFTSSCLHPRTGYSRPSNHQRGTEMATRTQDFDHDVVIVGASFAGAACALAAARAGLRVVVLERKTDPGS
KLHTTGILVKEAAEQTWLGRAPADCLRRIEKVHLYSPALRSLALAAPGYYFLTTDTPNLMRWLASELVNHGVDLRLGTSF
SQASRSGAGWSVPGVGRTRYLVGADGARSRVAQIAGLGQGNAFLYGVEYEFAGLQLSDPDALHCFASKHFAPGYIGWVAQ
NPTGVQAGLALRHAPRRRAAPDIDGFLRRVRHLLGVPEDAAPTTTRAGLIPCGGPVYPLARDGVLLTGDAAGIVSPVTAG
GIHAAWRHGEAVGRAIAAHLRTGAATPEQVAEQSAPRFRTKRLLRWAFDHFQSDWAFDVLLHSAPLRWVAERIYFHKRGV
AAEI

Sequences:

>Translated_404_residues
MPSARHPPPFTFTSSCLHPRTGYSRPSNHQRGTEMATRTQDFDHDVVIVGASFAGAACALAAARAGLRVVVLERKTDPGS
KLHTTGILVKEAAEQTWLGRAPADCLRRIEKVHLYSPALRSLALAAPGYYFLTTDTPNLMRWLASELVNHGVDLRLGTSF
SQASRSGAGWSVPGVGRTRYLVGADGARSRVAQIAGLGQGNAFLYGVEYEFAGLQLSDPDALHCFASKHFAPGYIGWVAQ
NPTGVQAGLALRHAPRRRAAPDIDGFLRRVRHLLGVPEDAAPTTTRAGLIPCGGPVYPLARDGVLLTGDAAGIVSPVTAG
GIHAAWRHGEAVGRAIAAHLRTGAATPEQVAEQSAPRFRTKRLLRWAFDHFQSDWAFDVLLHSAPLRWVAERIYFHKRGV
AAEI
>Mature_403_residues
PSARHPPPFTFTSSCLHPRTGYSRPSNHQRGTEMATRTQDFDHDVVIVGASFAGAACALAAARAGLRVVVLERKTDPGSK
LHTTGILVKEAAEQTWLGRAPADCLRRIEKVHLYSPALRSLALAAPGYYFLTTDTPNLMRWLASELVNHGVDLRLGTSFS
QASRSGAGWSVPGVGRTRYLVGADGARSRVAQIAGLGQGNAFLYGVEYEFAGLQLSDPDALHCFASKHFAPGYIGWVAQN
PTGVQAGLALRHAPRRRAAPDIDGFLRRVRHLLGVPEDAAPTTTRAGLIPCGGPVYPLARDGVLLTGDAAGIVSPVTAGG
IHAAWRHGEAVGRAIAAHLRTGAATPEQVAEQSAPRFRTKRLLRWAFDHFQSDWAFDVLLHSAPLRWVAERIYFHKRGVA
AEI

Specific function: Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. DGGGPL reductase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR011777
- InterPro:   IPR003042
- InterPro:   IPR006905 [H]

Pfam domain/function: PF01266 DAO; PF04820 Trp_halogenase [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 43516; Mature: 43385

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSARHPPPFTFTSSCLHPRTGYSRPSNHQRGTEMATRTQDFDHDVVIVGASFAGAACAL
CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHH
AAARAGLRVVVLERKTDPGSKLHTTGILVKEAAEQTWLGRAPADCLRRIEKVHLYSPALR
HHHHCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SLALAAPGYYFLTTDTPNLMRWLASELVNHGVDLRLGTSFSQASRSGAGWSVPGVGRTRY
HHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCCCEEE
LVGADGARSRVAQIAGLGQGNAFLYGVEYEFAGLQLSDPDALHCFASKHFAPGYIGWVAQ
EEECCCHHHHHHHHHCCCCCCEEEEEEEEEECCCEECCCCHHHHHHHCCCCCCEEEEEEC
NPTGVQAGLALRHAPRRRAAPDIDGFLRRVRHLLGVPEDAAPTTTRAGLIPCGGPVYPLA
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
RDGVLLTGDAAGIVSPVTAGGIHAAWRHGEAVGRAIAAHLRTGAATPEQVAEQSAPRFRT
CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
KRLLRWAFDHFQSDWAFDVLLHSAPLRWVAERIYFHKRGVAAEI
HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PSARHPPPFTFTSSCLHPRTGYSRPSNHQRGTEMATRTQDFDHDVVIVGASFAGAACAL
CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHH
AAARAGLRVVVLERKTDPGSKLHTTGILVKEAAEQTWLGRAPADCLRRIEKVHLYSPALR
HHHHCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SLALAAPGYYFLTTDTPNLMRWLASELVNHGVDLRLGTSFSQASRSGAGWSVPGVGRTRY
HHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCCCEEE
LVGADGARSRVAQIAGLGQGNAFLYGVEYEFAGLQLSDPDALHCFASKHFAPGYIGWVAQ
EEECCCHHHHHHHHHCCCCCCEEEEEEEEEECCCEECCCCHHHHHHHCCCCCCEEEEEEC
NPTGVQAGLALRHAPRRRAAPDIDGFLRRVRHLLGVPEDAAPTTTRAGLIPCGGPVYPLA
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
RDGVLLTGDAAGIVSPVTAGGIHAAWRHGEAVGRAIAAHLRTGAATPEQVAEQSAPRFRT
CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
KRLLRWAFDHFQSDWAFDVLLHSAPLRWVAERIYFHKRGVAAEI
HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]