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The map label for this gene is omlA [H]

Identifier: 94310596

GI number: 94310596

Start: 1789472

End: 1790029

Strand: Reverse

Name: omlA [H]

Synonym: Rmet_1654

Alternate gene names: 94310596

Gene position: 1790029-1789472 (Counterclockwise)

Preceding gene: 335055539

Following gene: 94310595

Centisome position: 45.57

GC content: 60.57

Gene sequence:

>558_bases
GTGCATTCCGGCCGCCATCATCCTGGTCTCTCGCTATCTCTGACGGAGCGCTGTCCGCCAGAACAGAACTTGCTACACAT
GTCCTCCAACTACGCTCGCGCCGCGTCCTATGGGATCGCATTGGCTCTGCTCACCGGCTGCGCCGCCTATGACCGCGGCT
CACTCTCTTTGGCACACGCCATCACGCCCTATCAGATCACTATCGAACAGGGCAACTTTGTGTCGCGTGAGGCGGTCGCC
CAGCTCAGGCCCGGCATGACCCGGGATCAGGTGAGCTTCCTGCTTGGCACGCCTTTGCTGACCGATGTCTTCCATGCAGA
TCGCTGGGACTATGTTTTCACCTTCCGGCGTGGTCGTCGCGATATCGTGCAGCAACGACGACTGACCGCATACTTCGCGG
GCGACAGACTCCTGCGCTTTGACAGTGATCCGATGCCCAGTGAAAAGGAACTGATCGCCGAGATCGATGGCGTGCGGCGC
GGAAAGGTTTTGCCAAGCGCGAACGCGAGTTCGCCCACCAACGCCGCCGAGCACCAACCTCCTGAGCCAACAGCATGA

Upstream 100 bases:

>100_bases
TCCTCCTCTGCGCGCTACTTGTGCCGTGGTTCGTTTCGCGAAAAACGAGCACAGACGAACATGGCGGGGCATTTGGCGGC
GTTCTGAGCACGGTGTTCGT

Downstream 100 bases:

>100_bases
AGATTGCAGTACGGCTTCAACAAATCCAGTATCGCCTTCTTGTCGCTATATGCTGACGTGGAAGCGTAGACTCCACTTCA
CAAATTCGTGCCAAGTGCCC

Product: putative small protein A (tmRNA-binding)-related protein (SmpA/OmlA fragment)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MHSGRHHPGLSLSLTERCPPEQNLLHMSSNYARAASYGIALALLTGCAAYDRGSLSLAHAITPYQITIEQGNFVSREAVA
QLRPGMTRDQVSFLLGTPLLTDVFHADRWDYVFTFRRGRRDIVQQRRLTAYFAGDRLLRFDSDPMPSEKELIAEIDGVRR
GKVLPSANASSPTNAAEHQPPEPTA

Sequences:

>Translated_185_residues
MHSGRHHPGLSLSLTERCPPEQNLLHMSSNYARAASYGIALALLTGCAAYDRGSLSLAHAITPYQITIEQGNFVSREAVA
QLRPGMTRDQVSFLLGTPLLTDVFHADRWDYVFTFRRGRRDIVQQRRLTAYFAGDRLLRFDSDPMPSEKELIAEIDGVRR
GKVLPSANASSPTNAAEHQPPEPTA
>Mature_185_residues
MHSGRHHPGLSLSLTERCPPEQNLLHMSSNYARAASYGIALALLTGCAAYDRGSLSLAHAITPYQITIEQGNFVSREAVA
QLRPGMTRDQVSFLLGTPLLTDVFHADRWDYVFTFRRGRRDIVQQRRLTAYFAGDRLLRFDSDPMPSEKELIAEIDGVRR
GKVLPSANASSPTNAAEHQPPEPTA

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=110, Percent_Identity=31.8181818181818, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 20516; Mature: 20516

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSGRHHPGLSLSLTERCPPEQNLLHMSSNYARAASYGIALALLTGCAAYDRGSLSLAHA
CCCCCCCCCCEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
ITPYQITIEQGNFVSREAVAQLRPGMTRDQVSFLLGTPLLTDVFHADRWDYVFTFRRGRR
CCCEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEEHHCHH
DIVQQRRLTAYFAGDRLLRFDSDPMPSEKELIAEIDGVRRGKVLPSANASSPTNAAEHQP
HHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PEPTA
CCCCC
>Mature Secondary Structure
MHSGRHHPGLSLSLTERCPPEQNLLHMSSNYARAASYGIALALLTGCAAYDRGSLSLAHA
CCCCCCCCCCEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
ITPYQITIEQGNFVSREAVAQLRPGMTRDQVSFLLGTPLLTDVFHADRWDYVFTFRRGRR
CCCEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEEHHCHH
DIVQQRRLTAYFAGDRLLRFDSDPMPSEKELIAEIDGVRRGKVLPSANASSPTNAAEHQP
HHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PEPTA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]