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The map label for this gene is rlmB [C]

Identifier: 94310392

GI number: 94310392

Start: 1571492

End: 1572280

Strand: Direct

Name: rlmB [C]

Synonym: Rmet_1450

Alternate gene names: 94310392

Gene position: 1571492-1572280 (Clockwise)

Preceding gene: 94310391

Following gene: 94310395

Centisome position: 40.01

GC content: 60.96

Gene sequence:

>789_bases
TTGAAGCATGTCACTTCGCGCGACAACGCGCTGTTCAAACAGTTAAAAGCCCTGACAGGGTCCACGCACCAGCGCCGCAA
GGCGGGGCAGTCCGTGCTCGATGGCATCCATCTCGCGCAGGCCTACGTGGCTGCGCTTGGGCAGCCCGCGAGCTGTGTGG
TGAGCGAGCGCCATTATGACCACGCCGAGGTGCGCGCGCTGCTCGAGAAGATCGACTCGGACAAGCTGGTTGTATTGGCT
GATGCGTTGTTCGCGCAGATTAGCAGTGTGGTCAACGGCGTCGATCTGATGCTGGTGATCGATACGCCGGCCGGACATCT
CCCGGCAACCATCGATACCGATTGCATCATTCTGGATGGTCTGCAGGATGCGGGCAATGTCGGCTCGATTCTTCGAAGCG
CTGCGGCCGCTGGCATTCCACATGCGTTCCTGACCAAAGGTTGCGCATTCGCCTGGTCGGTCAAGACGTTGCGTGCCGGT
ATGGGCGCGAATTTCCACTTGAATATCGTCGAACATTGCACGCTTGAGATGCTTGAGAGCCGGCTGGCAGTGCCGTTACT
GGCGACGTCATCCCATGCGGACGCGGCGGTGTTCGATACAGATCTGCGCCAGCCGGTTGGCTGGGTGATTGGCAATGAAG
GGGGAGGAGTCAGCCCCGAGTGGATGGCGCATGTTTCCCGTACGGTTGGCATTCCGCAGCCTGGAGGTTTGGAGTCGCTG
AATGTGGCCGCGGCAACGGCGGTCTGCCTGTTTGAAGCCGTCCGGCAACGCCGCGCTAGCGGCGGATAG

Upstream 100 bases:

>100_bases
GCCGCATCATCGGCGTTCGTTTGCGCCGGTGCGCAAGGTGCTTGAGCGTGGCATGGTACGCACCATGTCGTCCGAAGCGC
CGCCTTTCTGAGGCAGACTC

Downstream 100 bases:

>100_bases
CACGGACGCCAAGCCGCTTGGCGGTGGGCTGAGTTATCTGGCTCGCCCGGCAGCCGGCTGTCCTGTGCCAGCAGGCTGTT
CTGCCTTCTGAGACACCAAT

Product: 23S rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKHVTSRDNALFKQLKALTGSTHQRRKAGQSVLDGIHLAQAYVAALGQPASCVVSERHYDHAEVRALLEKIDSDKLVVLA
DALFAQISSVVNGVDLMLVIDTPAGHLPATIDTDCIILDGLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAG
MGANFHLNIVEHCTLEMLESRLAVPLLATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGIPQPGGLESL
NVAAATAVCLFEAVRQRRASGG

Sequences:

>Translated_262_residues
MKHVTSRDNALFKQLKALTGSTHQRRKAGQSVLDGIHLAQAYVAALGQPASCVVSERHYDHAEVRALLEKIDSDKLVVLA
DALFAQISSVVNGVDLMLVIDTPAGHLPATIDTDCIILDGLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAG
MGANFHLNIVEHCTLEMLESRLAVPLLATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGIPQPGGLESL
NVAAATAVCLFEAVRQRRASGG
>Mature_262_residues
MKHVTSRDNALFKQLKALTGSTHQRRKAGQSVLDGIHLAQAYVAALGQPASCVVSERHYDHAEVRALLEKIDSDKLVVLA
DALFAQISSVVNGVDLMLVIDTPAGHLPATIDTDCIILDGLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAG
MGANFHLNIVEHCTLEMLESRLAVPLLATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGIPQPGGLESL
NVAAATAVCLFEAVRQRRASGG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=300, Percent_Identity=29.6666666666667, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1790623, Length=146, Percent_Identity=32.1917808219178, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27583; Mature: 27583

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHVTSRDNALFKQLKALTGSTHQRRKAGQSVLDGIHLAQAYVAALGQPASCVVSERHYD
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
HAEVRALLEKIDSDKLVVLADALFAQISSVVNGVDLMLVIDTPAGHLPATIDTDCIILDG
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEC
LQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFHLNIVEHCTLEMLES
CCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
RLAVPLLATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGIPQPGGLESL
HHCCEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHH
NVAAATAVCLFEAVRQRRASGG
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKHVTSRDNALFKQLKALTGSTHQRRKAGQSVLDGIHLAQAYVAALGQPASCVVSERHYD
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
HAEVRALLEKIDSDKLVVLADALFAQISSVVNGVDLMLVIDTPAGHLPATIDTDCIILDG
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEC
LQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFHLNIVEHCTLEMLES
CCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
RLAVPLLATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGIPQPGGLESL
HHCCEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHH
NVAAATAVCLFEAVRQRRASGG
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]