Click here to switch to the map view.

The map label for this gene is glnD

Identifier: 94310375

GI number: 94310375

Start: 1552441

End: 1555014

Strand: Reverse

Name: glnD

Synonym: Rmet_1433

Alternate gene names: 94310375

Gene position: 1555014-1552441 (Counterclockwise)

Preceding gene: 94310376

Following gene: 94310374

Centisome position: 39.59

GC content: 64.26

Gene sequence:

>2574_bases
ATGGACACCACGCCGGAACTGCTGCTCTGCCAGCGCATTCGCGACAAGCTCAAAGCTGACAAGCAGGTGCTGTTCGCCGA
ATTCGACGCGAACAACCAGGTCAATCCACTCGTCACCAAGCTGCGCCGCGCCGTCGACGTCGCGCTGACGGAAGCCTGGA
CCGGCCTGGAACTGCCCGGCGATGTCGCCCTGGTGGCGGTGGGCGGCTATGGGCGCGGCGAGCTGTTCCCCCACTCCGAC
GTCGATGTGCTGCTGCTCCTGCCCGGCGAGCCCGATGCGAAAATGGCAGCGAAACTCGAGCGCTTCATCGGCCTATGCTG
GGACCTGGGCCTCGAGATCGGTTCGTCGGTACGTACGGTCGACGACTGCATCCGCGAGTCGGCGGCCGACATCACGATCC
GCACATCGCTGCTCGAGGCACGTCTGCTGATCGGCAACAAGGCGCTTTTCAAGTCCTTGCAGACGCGCTATCAGGCCGAC
ATGGACGCGGCCGACTTCTTCCAGGCCAAGCTGCTGGAAATGCGTCAGCGGCATGCCAAGTACCAGGACACGCCGTACGC
ACTGGAACCGAACTGCAAGGAAAGCCCGGGCGGCTTGCGCGACCTGCAGGTCATCCTGTGGATGACCGAGGCCGCCAGGC
TCGGCGACAGCTGGAAGCAACTGTTCGAGCGCGGCCTGCTGACCGAGCGCGAAGCGCAGGAACTCACCCGCAACGAGCGC
CTGCTGCGCACGATCCGCGCTCGCCTGCACCTGCTGGCCGGCCGCCGCCAGGACGTGCTCGTGTTCGACTTGCAGACGGC
GCTGGCCGAGGCATTCGGCTATCGGCAGACCACGAACAAGCGCGCCAGCGAGCAGCTGATGCGCCGCTACTACTGGGCAG
CCAAGGCAGTCACGCAGCTCAACAGCGTGCTGCTGCTGAACATCGAGGCGATGTTGTTCCCGAGCGAGTCGATGGTCACG
CGCGAGATCAACGATCGTTTCGTCGAACGCCAGGGAATGCTGGAGATCACGAGCGACGATCTCTACGAGCGCAATCCGCA
CGCGATCCTGGAGACGTTCCTGCTCTATGAGCGCACGCCCGGCGTGAAAGGCCTTTCGCCGCGCACGCTGCGCGGGCTCT
ACAACGCGCGAACGGTCATGGACGCCAGCTGGCGCAACGATCCGGTGAACCGTCGCCTGTTCCTGGCCATCGTCCAGGAG
CCGCAGGGGATCACCCATGCGTTGCGCCTGATGAACCAGACCAGCGTGCTAGGCCGCTACCTGATCAATTTCCGACGCAT
CGTCGGCCAGATGCAGCACGACCTGTTCCACGTCTATACCGTGGACCAGCACATCCTGATGGTCGTGCGCAATATGCGCC
GCTTCGCCATCGTCGAGCATACGCATGAGTTTCCGTTCTGCAGCCAGTTGATGGCCGGCTTCGACCGCCCATGGGTGCTG
TGGGTGGCGGCGCTGTTCCATGACATCGCCAAGGGTCGTGGCGGCGATCATTCGAAGCTCGGCACCGTCGATGCGCGCCG
CTTCTGCAAGCAGCATGGCATCTCGCGCGAGGACACCGACCTGATCGCGTGGCTGGTCGAGCATCACCTGACGATGAGCC
ACGTCGCCCAGAAACAGGACCTGACCGACCCCGACGTGGTCAAGGCATTCGCCCAGGTAGTGGGCAACGGGCGCTATCTG
ACCGCGCTGTACCTGCTGACCGTGGCCGATATCCGCGGCACCAGCCCGAAAGTCTGGAATGCCTGGAAGGGCAAGCTGCT
CGAGGACCTGTACCGCATCACGCTGCGCGTGCTCGGCGGCGCGCGGCTCGACACGCATTCGCTCTGGGCGCAGAAGCGCG
ACGACACGATCGCCCAACTGCGACTGAAAGCATTCGATCCCGAACTGGCCAAGCCGCTGTGGGACAAGCTCGACATGTCG
TTCTTCATGCGGCAGGACGCTCGCGACATCGCCTGGCTCACGCGCAGTCTGTTCAACAAGGTGAACAGTCCCAACCCCGT
GGTCAAAGCGCGCATCTCGCCGGCGGGCGAAGGCCTCCAGGTGGCGGTCTACGTCAAGGATCAGCCCGACCTGTTCGCGC
GTATCTGCGGCTACTTCGAGCGCAAGGCCTTTTCGATTCAGGACGCCAAGATCGAGACCACGCGCGACGGGTACGCGCTG
GATACGTTCCAGATCACGGACCCAGGCCTTGCCGGTGACTACCGCGACATCCTGACGCTGGTCGAGCACGAACTCGGTGA
GCGCGTGCGGCTGGAGTGCCCACTGCCCGACCCTACACAAGGACGCCTGTCGCGCCAGTCGCGCAGTTTCCCCATCAAGC
CGCGCGTGGACCTGCGTCCCGACGAGCGCGGCCAGTATTACCTGCTGTCGGTATCCGCCAACGACCGCACCGGCCTGCTG
TACGCGATCGCGCGCGTGCTGGCCAAACATCGCGTGTCCGTGCATTCGGCACGCATCAATACGCTCGGTGAACGCGTGGA
AGACGTGTTCCTGGTCGACGGCTCGCGACTGGCCGCCGACAACCGATTGCAGATTCAGCTTGAACAGGACCTGCTCGACG
CGCTGGCCATCTAA

Upstream 100 bases:

>100_bases
ACGGAAACCGTGGCGGCCTGACGCCGCATCGTTCGCCAGGGCGCCAACCACGGCGCCCTTTCTTCTTGCAGCCGTGCCTA
CGACCTCCATCGACCCGCCC

Downstream 100 bases:

>100_bases
GGCCGGCACGCCGGTAGTTGAAACGATATGACCGATAGCAATACGCCCGGCCGCAAGACGCTGGGCATCAAGACCACCTC
CTCCAGCACAACGCGCAAGG

Product: PII uridylyl-transferase

Products: NA

Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme

Number of amino acids: Translated: 857; Mature: 857

Protein sequence:

>857_residues
MDTTPELLLCQRIRDKLKADKQVLFAEFDANNQVNPLVTKLRRAVDVALTEAWTGLELPGDVALVAVGGYGRGELFPHSD
VDVLLLLPGEPDAKMAAKLERFIGLCWDLGLEIGSSVRTVDDCIRESAADITIRTSLLEARLLIGNKALFKSLQTRYQAD
MDAADFFQAKLLEMRQRHAKYQDTPYALEPNCKESPGGLRDLQVILWMTEAARLGDSWKQLFERGLLTEREAQELTRNER
LLRTIRARLHLLAGRRQDVLVFDLQTALAEAFGYRQTTNKRASEQLMRRYYWAAKAVTQLNSVLLLNIEAMLFPSESMVT
REINDRFVERQGMLEITSDDLYERNPHAILETFLLYERTPGVKGLSPRTLRGLYNARTVMDASWRNDPVNRRLFLAIVQE
PQGITHALRLMNQTSVLGRYLINFRRIVGQMQHDLFHVYTVDQHILMVVRNMRRFAIVEHTHEFPFCSQLMAGFDRPWVL
WVAALFHDIAKGRGGDHSKLGTVDARRFCKQHGISREDTDLIAWLVEHHLTMSHVAQKQDLTDPDVVKAFAQVVGNGRYL
TALYLLTVADIRGTSPKVWNAWKGKLLEDLYRITLRVLGGARLDTHSLWAQKRDDTIAQLRLKAFDPELAKPLWDKLDMS
FFMRQDARDIAWLTRSLFNKVNSPNPVVKARISPAGEGLQVAVYVKDQPDLFARICGYFERKAFSIQDAKIETTRDGYAL
DTFQITDPGLAGDYRDILTLVEHELGERVRLECPLPDPTQGRLSRQSRSFPIKPRVDLRPDERGQYYLLSVSANDRTGLL
YAIARVLAKHRVSVHSARINTLGERVEDVFLVDGSRLAADNRLQIQLEQDLLDALAI

Sequences:

>Translated_857_residues
MDTTPELLLCQRIRDKLKADKQVLFAEFDANNQVNPLVTKLRRAVDVALTEAWTGLELPGDVALVAVGGYGRGELFPHSD
VDVLLLLPGEPDAKMAAKLERFIGLCWDLGLEIGSSVRTVDDCIRESAADITIRTSLLEARLLIGNKALFKSLQTRYQAD
MDAADFFQAKLLEMRQRHAKYQDTPYALEPNCKESPGGLRDLQVILWMTEAARLGDSWKQLFERGLLTEREAQELTRNER
LLRTIRARLHLLAGRRQDVLVFDLQTALAEAFGYRQTTNKRASEQLMRRYYWAAKAVTQLNSVLLLNIEAMLFPSESMVT
REINDRFVERQGMLEITSDDLYERNPHAILETFLLYERTPGVKGLSPRTLRGLYNARTVMDASWRNDPVNRRLFLAIVQE
PQGITHALRLMNQTSVLGRYLINFRRIVGQMQHDLFHVYTVDQHILMVVRNMRRFAIVEHTHEFPFCSQLMAGFDRPWVL
WVAALFHDIAKGRGGDHSKLGTVDARRFCKQHGISREDTDLIAWLVEHHLTMSHVAQKQDLTDPDVVKAFAQVVGNGRYL
TALYLLTVADIRGTSPKVWNAWKGKLLEDLYRITLRVLGGARLDTHSLWAQKRDDTIAQLRLKAFDPELAKPLWDKLDMS
FFMRQDARDIAWLTRSLFNKVNSPNPVVKARISPAGEGLQVAVYVKDQPDLFARICGYFERKAFSIQDAKIETTRDGYAL
DTFQITDPGLAGDYRDILTLVEHELGERVRLECPLPDPTQGRLSRQSRSFPIKPRVDLRPDERGQYYLLSVSANDRTGLL
YAIARVLAKHRVSVHSARINTLGERVEDVFLVDGSRLAADNRLQIQLEQDLLDALAI
>Mature_857_residues
MDTTPELLLCQRIRDKLKADKQVLFAEFDANNQVNPLVTKLRRAVDVALTEAWTGLELPGDVALVAVGGYGRGELFPHSD
VDVLLLLPGEPDAKMAAKLERFIGLCWDLGLEIGSSVRTVDDCIRESAADITIRTSLLEARLLIGNKALFKSLQTRYQAD
MDAADFFQAKLLEMRQRHAKYQDTPYALEPNCKESPGGLRDLQVILWMTEAARLGDSWKQLFERGLLTEREAQELTRNER
LLRTIRARLHLLAGRRQDVLVFDLQTALAEAFGYRQTTNKRASEQLMRRYYWAAKAVTQLNSVLLLNIEAMLFPSESMVT
REINDRFVERQGMLEITSDDLYERNPHAILETFLLYERTPGVKGLSPRTLRGLYNARTVMDASWRNDPVNRRLFLAIVQE
PQGITHALRLMNQTSVLGRYLINFRRIVGQMQHDLFHVYTVDQHILMVVRNMRRFAIVEHTHEFPFCSQLMAGFDRPWVL
WVAALFHDIAKGRGGDHSKLGTVDARRFCKQHGISREDTDLIAWLVEHHLTMSHVAQKQDLTDPDVVKAFAQVVGNGRYL
TALYLLTVADIRGTSPKVWNAWKGKLLEDLYRITLRVLGGARLDTHSLWAQKRDDTIAQLRLKAFDPELAKPLWDKLDMS
FFMRQDARDIAWLTRSLFNKVNSPNPVVKARISPAGEGLQVAVYVKDQPDLFARICGYFERKAFSIQDAKIETTRDGYAL
DTFQITDPGLAGDYRDILTLVEHELGERVRLECPLPDPTQGRLSRQSRSFPIKPRVDLRPDERGQYYLLSVSANDRTGLL
YAIARVLAKHRVSVHSARINTLGERVEDVFLVDGSRLAADNRLQIQLEQDLLDALAI

Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein

COG id: COG2844

COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glnD family

Homologues:

Organism=Escherichia coli, GI1786363, Length=840, Percent_Identity=36.1904761904762, Blast_Score=504, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLND_RALME (Q1LNG0)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_583585.1
- ProteinModelPortal:   Q1LNG0
- SMR:   Q1LNG0
- STRING:   Q1LNG0
- GeneID:   4038236
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_1433
- eggNOG:   COG2844
- HOGENOM:   HBG687872
- OMA:   MQHDLFH
- PhylomeDB:   Q1LNG0
- ProtClustDB:   PRK03059
- BioCyc:   RMET266264:RMET_1433-MONOMER
- HAMAP:   MF_00277
- InterPro:   IPR002912
- InterPro:   IPR010043
- InterPro:   IPR003607
- InterPro:   IPR002934
- InterPro:   IPR013546
- PANTHER:   PTHR13734:SF1
- PIRSF:   PIRSF006288
- SMART:   SM00471
- TIGRFAMs:   TIGR01693

Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2

EC number: =2.7.7.59

Molecular weight: Translated: 97776; Mature: 97776

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTTPELLLCQRIRDKLKADKQVLFAEFDANNQVNPLVTKLRRAVDVALTEAWTGLELPG
CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
DVALVAVGGYGRGELFPHSDVDVLLLLPGEPDAKMAAKLERFIGLCWDLGLEIGSSVRTV
CEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
DDCIRESAADITIRTSLLEARLLIGNKALFKSLQTRYQADMDAADFFQAKLLEMRQRHAK
HHHHHHHHCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
YQDTPYALEPNCKESPGGLRDLQVILWMTEAARLGDSWKQLFERGLLTEREAQELTRNER
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
LLRTIRARLHLLAGRRQDVLVFDLQTALAEAFGYRQTTNKRASEQLMRRYYWAAKAVTQL
HHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHH
NSVLLLNIEAMLFPSESMVTREINDRFVERQGMLEITSDDLYERNPHAILETFLLYERTP
CCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCHHHCCCHHHHHHHHHHHHCCC
GVKGLSPRTLRGLYNARTVMDASWRNDPVNRRLFLAIVQEPQGITHALRLMNQTSVLGRY
CCCCCCCHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
LINFRRIVGQMQHDLFHVYTVDQHILMVVRNMRRFAIVEHTHEFPFCSQLMAGFDRPWVL
HHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHH
WVAALFHDIAKGRGGDHSKLGTVDARRFCKQHGISREDTDLIAWLVEHHLTMSHVAQKQD
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LTDPDVVKAFAQVVGNGRYLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRITLRVLGG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
ARLDTHSLWAQKRDDTIAQLRLKAFDPELAKPLWDKLDMSFFMRQDARDIAWLTRSLFNK
CCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNSPNPVVKARISPAGEGLQVAVYVKDQPDLFARICGYFERKAFSIQDAKIETTRDGYAL
CCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEECCEEEECCCCEEE
DTFQITDPGLAGDYRDILTLVEHELGERVRLECPLPDPTQGRLSRQSRSFPIKPRVDLRP
EEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
DERGQYYLLSVSANDRTGLLYAIARVLAKHRVSVHSARINTLGERVEDVFLVDGSRLAAD
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEECCC
NRLQIQLEQDLLDALAI
CEEEEEEHHHHHHHHCC
>Mature Secondary Structure
MDTTPELLLCQRIRDKLKADKQVLFAEFDANNQVNPLVTKLRRAVDVALTEAWTGLELPG
CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
DVALVAVGGYGRGELFPHSDVDVLLLLPGEPDAKMAAKLERFIGLCWDLGLEIGSSVRTV
CEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
DDCIRESAADITIRTSLLEARLLIGNKALFKSLQTRYQADMDAADFFQAKLLEMRQRHAK
HHHHHHHHCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
YQDTPYALEPNCKESPGGLRDLQVILWMTEAARLGDSWKQLFERGLLTEREAQELTRNER
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
LLRTIRARLHLLAGRRQDVLVFDLQTALAEAFGYRQTTNKRASEQLMRRYYWAAKAVTQL
HHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHH
NSVLLLNIEAMLFPSESMVTREINDRFVERQGMLEITSDDLYERNPHAILETFLLYERTP
CCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCHHHCCCHHHHHHHHHHHHCCC
GVKGLSPRTLRGLYNARTVMDASWRNDPVNRRLFLAIVQEPQGITHALRLMNQTSVLGRY
CCCCCCCHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
LINFRRIVGQMQHDLFHVYTVDQHILMVVRNMRRFAIVEHTHEFPFCSQLMAGFDRPWVL
HHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHH
WVAALFHDIAKGRGGDHSKLGTVDARRFCKQHGISREDTDLIAWLVEHHLTMSHVAQKQD
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LTDPDVVKAFAQVVGNGRYLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRITLRVLGG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
ARLDTHSLWAQKRDDTIAQLRLKAFDPELAKPLWDKLDMSFFMRQDARDIAWLTRSLFNK
CCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNSPNPVVKARISPAGEGLQVAVYVKDQPDLFARICGYFERKAFSIQDAKIETTRDGYAL
CCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEECCEEEECCCCEEE
DTFQITDPGLAGDYRDILTLVEHELGERVRLECPLPDPTQGRLSRQSRSFPIKPRVDLRP
EEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
DERGQYYLLSVSANDRTGLLYAIARVLAKHRVSVHSARINTLGERVEDVFLVDGSRLAAD
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEECCC
NRLQIQLEQDLLDALAI
CEEEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA