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The map label for this gene is ritC1 [C]

Identifier: 94310217

GI number: 94310217

Start: 1395642

End: 1396637

Strand: Direct

Name: ritC1 [C]

Synonym: Rmet_1273

Alternate gene names: 94310217

Gene position: 1395642-1396637 (Clockwise)

Preceding gene: 94310216

Following gene: 94310224

Centisome position: 35.53

GC content: 61.75

Gene sequence:

>996_bases
GTGAGCGCCGCCAGTCTCCCAGCCCTCGTTCAGCGCTTCTTCACCCAGCGCCTGCTCGAGCAGCAAGGTCTGAGTTCGCA
TACGGTGGCAAGTTACCGTGACACGTTCCGGCTGTTGCTGGCGTTCGCCACGAAGCATATAGGGCGCGCGCCGTCAAAGC
TGCGAATCGAGGACTTCGACGTGTCGTTGATCGAGGAATTCCTGCAGCACCTCGAACACGGCAGAGGCAATTCGGTGCGC
ACACGCAACACGCGGCTTGCCGCCGTGCATGCCTTCTTCCGGTTCGTCGCGGTCAGCGAGCCTGCGTTGTTTCTGCTGTG
TCAGCGCATTCTTGCAATCCCATCCAAACGCTGCGAGCACGGCCCGGTTGAGTTTCTGACCGAGAGCGAGGCCGCCGCTC
TGGTAGGGGCGCCTGACGTACGAAACTGGATCGGCAACCGCGACCGAACGCTGCTTCTTGTAGCGGTTCAAACGGGTCTG
CGCAATAGCGAATTGACCGCACTCCGGCGCCAGGATGTGGCGCTCGGCACAGGCGCCCACGTTCGTTGCCTCGGCAAAGG
CAGAAAGATGAGATGCACTCCGCTGCGACCGGATGTAGTTGCCGTCCTGAAACAGTGGCTGCTGTATCAACCAGGCGAGC
CAGGCGATCCGGTCTTCCCCAGTTCGCGCGGCGGTCATCTCAGTGCCGATGCTCTTCAGCAACTCGTGTCGCGCAACGCC
GAAACCGCGCGCCTCTCGTGCCCCTCGCTGAAGAAGAAATCAATAACGCCTCATACGCTTCGACACACGGCCGCGATGAG
CCTGATGCATCACGGCGTCGACCTGACCGTGATCGCACTCTGGCTCGGGCACGAGTCCTCCGAGACTACTCAGATCTATT
TGCACGCCGACATGCAGCTCAAGGAACGCGCGCTCGCGCACGCGACGGCGAGTGGTGTTGCACCGACACGCTACAAACCT
CCAGATCCGTTGCTCGCCTTCCTGGAGGCCCTCTGA

Upstream 100 bases:

>100_bases
ATGTCAACATCGGCCTTACGTACTGGTATATCGAATCGGTTCCTGAGTTGCTGGAACTCGCGGCAGCCTATCTCGACAAG
GACTGTCCGGGAGAACGGAC

Downstream 100 bases:

>100_bases
TAATGCCGACAACCGGAGCGACCGGGAACAGAGATCCGCCAACCGTTGTGTCCGTGGATGCATGACGCGGCATAATCGGG
GAGTCGGCATAATTGGGTTC

Product: tyrosine-based site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSAASLPALVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSKLRIEDFDVSLIEEFLQHLEHGRGNSVR
TRNTRLAAVHAFFRFVAVSEPALFLLCQRILAIPSKRCEHGPVEFLTESEAAALVGAPDVRNWIGNRDRTLLLVAVQTGL
RNSELTALRRQDVALGTGAHVRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGDPVFPSSRGGHLSADALQQLVSRNA
ETARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQLKERALAHATASGVAPTRYKP
PDPLLAFLEAL

Sequences:

>Translated_331_residues
MSAASLPALVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSKLRIEDFDVSLIEEFLQHLEHGRGNSVR
TRNTRLAAVHAFFRFVAVSEPALFLLCQRILAIPSKRCEHGPVEFLTESEAAALVGAPDVRNWIGNRDRTLLLVAVQTGL
RNSELTALRRQDVALGTGAHVRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGDPVFPSSRGGHLSADALQQLVSRNA
ETARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQLKERALAHATASGVAPTRYKP
PDPLLAFLEAL
>Mature_330_residues
SAASLPALVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSKLRIEDFDVSLIEEFLQHLEHGRGNSVRT
RNTRLAAVHAFFRFVAVSEPALFLLCQRILAIPSKRCEHGPVEFLTESEAAALVGAPDVRNWIGNRDRTLLLVAVQTGLR
NSELTALRRQDVALGTGAHVRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGDPVFPSSRGGHLSADALQQLVSRNAE
TARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQLKERALAHATASGVAPTRYKPP
DPLLAFLEAL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=301, Percent_Identity=28.2392026578073, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790244, Length=299, Percent_Identity=27.7591973244147, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36585; Mature: 36454

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAASLPALVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSKLRIEDFD
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC
VSLIEEFLQHLEHGRGNSVRTRNTRLAAVHAFFRFVAVSEPALFLLCQRILAIPSKRCEH
HHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHCCCC
GPVEFLTESEAAALVGAPDVRNWIGNRDRTLLLVAVQTGLRNSELTALRRQDVALGTGAH
CCHHHHCCCCCCEEECCCHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHEECCCCE
VRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGDPVFPSSRGGHLSADALQQLVSRNA
EEEECCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
ETARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQL
CCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECHHH
KERALAHATASGVAPTRYKPPDPLLAFLEAL
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
>Mature Secondary Structure 
SAASLPALVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSKLRIEDFD
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC
VSLIEEFLQHLEHGRGNSVRTRNTRLAAVHAFFRFVAVSEPALFLLCQRILAIPSKRCEH
HHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHCCCC
GPVEFLTESEAAALVGAPDVRNWIGNRDRTLLLVAVQTGLRNSELTALRRQDVALGTGAH
CCHHHHCCCCCCEEECCCHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHEECCCCE
VRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGDPVFPSSRGGHLSADALQQLVSRNA
EEEECCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
ETARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQL
CCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECHHH
KERALAHATASGVAPTRYKPPDPLLAFLEAL
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]