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The map label for this gene is tnpA

Identifier: 94310224

GI number: 94310224

Start: 1400002

End: 1401393

Strand: Direct

Name: tnpA

Synonym: Rmet_1280

Alternate gene names: NA

Gene position: 1400002-1401393 (Clockwise)

Preceding gene: 94310217

Following gene: 94310243

Centisome position: 35.64

GC content: 63.65

Gene sequence:

>1392_bases
ATGCATCTGAGGCTGCACAAGAACGCCACCACGACACCCAGGATCCGCGCCGAGATCCAGGTCAGCAAGGAGCCCATGAG
GGTTCTGGCCCAGCGCTTTGGCGTGAGTGTCTCCACCATCGCTCGCTGGAAGAAGCGTGCATCGGTTCATGACGCCTCCC
ATACCCCTCATCGACTGCAAACCACGCTGACGCCGGCCCAGGAGTCCATCGTGCTCGTCTTGCGTAAAAGCCTGGGCCTT
TCGCTGGATGACCTGCTGGCAGTCGTACGCGAGTTCATCCATCCGACCGTCTCACGCGCTGCCTTGCACCGCATGCTCAA
ACGCCATGGAGTGTCGGCGCGCGAGGCATTGAGCGTGGATCGCCCCAGGACCAAGCCGTTCAAGGCCTACGAGCCCGGCT
TCGTCCACATCGATGTGAAGTACCTGCCGCAGATGGCGGACGAAACCACGCGGCGTTACCTGTTTGTGGCCATTGATCGC
GCCACCCGCTGGGTGTTCGTGCGTGTCTATGCCAGCAAGAGCGCTACCAACGCCCGGCGCTTCCTGAAGGAATTGCACAA
GGCCGCTGCCTTCCGTATCCGAACGATCCTGACCGACAACGGCAAGGAATTCACGGATCGCTTCATCACACGGGGAGAGC
GTACGCCGACCGGCAGGCATCAGTTCGATCAGCTCTGCGAGGAGCTAGGCATTGAGCATCGCCTGACCCGCCCAAAACAC
CCGCAGACCAACGGCATGGTTGAACGCTTCAACGGGCGCATCGCCGACATCCTGCGCACCCATCACTTCCATTCCGGCGA
AGAACTTGAGGCCACCATCCTGCGGTATGTCTGGCTGTACAATCACCAACTGCCACAGAAAGCCTTGGGGCATGTCAGCC
CCATCCAGGCCATGAAACAATGGCAGCGATCACACCCCGAACTGTTCAACAGACGTGTTACCAATCAGCCGGGACACGAC
ACGATCTCGGCCTTGCCGCTTTCGGTCTTGCGAAACACCAGACTCGACATCACACGTCTCCTCGTCTCTTGTTTTCATCA
GACCCCGCCCAGAGCGAGGTGCCCCTTCGAGGGGCACCGAGGAACCGGCTCCGCCGGGCCTCAGGTGCCGTCCCCCTGCC
CAGCGCCGAAGGCGCGCCAGAGCGGGGGGAAGCCGCGCAGCGGCGCAGGGGGGTGTCAACAAATCCTCGGCAGCTGCTCC
CCACTCAGCCAGTCCACCACCCGCCGCCCGCCGAAGCGCGTGGCCATCTGCACGAAGTGGTGCGGGTCGGTGGTGACCTC
GCCGATGCGGGCCGCGTCCTGCCCCAGCGGGTGGGCGCGCATGGCGGCCAGCACGGCCTCGGCCGCCTCGGGCGCGACCA
CTGCGATCAGCTTGCCCTCGTTGGCCACGTAG

Upstream 100 bases:

>100_bases
TTGCCGTTGTCTGTCCTAATTGTCGTGTCCCTGATGATTGGTTAATTGGTTCACGCCGTGGTTTACTCTTGGCCCGAGAG
GTCATGCTGGAGCTGAAACG

Downstream 100 bases:

>100_bases
AGCGGGTCCAGGCCCAGCAGCTCGCAGGCGGCGTCCACCTGCGGCTTGACCGGGATGGCGGCCTCCTGCAGCAGCATGCC
CACGCCCGACTGGCGCGCGA

Product: transposase ISRme5 (copy b, CMGI-2)

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; Transcriptional Regulator; Integrase; Integrase Catalytic Domain-Containing Protein; Integrase Protein; Integrase Catalytic Core; Fis Family Transcriptional Regulator; Transposase And Inactivated Derivatives; ISKpn8 Transposase; LOW QUALITY PROTEIN Integrase Catalytic Subunit; Transposase For ISMyma; ISAca1 Transposase; Transposase ; Instegrase; Insertion Element ISCmi2 Transposase; Transcriptional Regulator Fis Family Protein; Insertion Sequence Transposase Protein; Transposase Of; LOW QUALITY PROTEIN Transposase

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MHLRLHKNATTTPRIRAEIQVSKEPMRVLAQRFGVSVSTIARWKKRASVHDASHTPHRLQTTLTPAQESIVLVLRKSLGL
SLDDLLAVVREFIHPTVSRAALHRMLKRHGVSAREALSVDRPRTKPFKAYEPGFVHIDVKYLPQMADETTRRYLFVAIDR
ATRWVFVRVYASKSATNARRFLKELHKAAAFRIRTILTDNGKEFTDRFITRGERTPTGRHQFDQLCEELGIEHRLTRPKH
PQTNGMVERFNGRIADILRTHHFHSGEELEATILRYVWLYNHQLPQKALGHVSPIQAMKQWQRSHPELFNRRVTNQPGHD
TISALPLSVLRNTRLDITRLLVSCFHQTPPRARCPFEGHRGTGSAGPQVPSPCPAPKARQSGGKPRSGAGGCQQILGSCS
PLSQSTTRRPPKRVAICTKWCGSVVTSPMRAASCPSGWARMAASTASAASGATTAISLPSLAT

Sequences:

>Translated_463_residues
MHLRLHKNATTTPRIRAEIQVSKEPMRVLAQRFGVSVSTIARWKKRASVHDASHTPHRLQTTLTPAQESIVLVLRKSLGL
SLDDLLAVVREFIHPTVSRAALHRMLKRHGVSAREALSVDRPRTKPFKAYEPGFVHIDVKYLPQMADETTRRYLFVAIDR
ATRWVFVRVYASKSATNARRFLKELHKAAAFRIRTILTDNGKEFTDRFITRGERTPTGRHQFDQLCEELGIEHRLTRPKH
PQTNGMVERFNGRIADILRTHHFHSGEELEATILRYVWLYNHQLPQKALGHVSPIQAMKQWQRSHPELFNRRVTNQPGHD
TISALPLSVLRNTRLDITRLLVSCFHQTPPRARCPFEGHRGTGSAGPQVPSPCPAPKARQSGGKPRSGAGGCQQILGSCS
PLSQSTTRRPPKRVAICTKWCGSVVTSPMRAASCPSGWARMAASTASAASGATTAISLPSLAT
>Mature_463_residues
MHLRLHKNATTTPRIRAEIQVSKEPMRVLAQRFGVSVSTIARWKKRASVHDASHTPHRLQTTLTPAQESIVLVLRKSLGL
SLDDLLAVVREFIHPTVSRAALHRMLKRHGVSAREALSVDRPRTKPFKAYEPGFVHIDVKYLPQMADETTRRYLFVAIDR
ATRWVFVRVYASKSATNARRFLKELHKAAAFRIRTILTDNGKEFTDRFITRGERTPTGRHQFDQLCEELGIEHRLTRPKH
PQTNGMVERFNGRIADILRTHHFHSGEELEATILRYVWLYNHQLPQKALGHVSPIQAMKQWQRSHPELFNRRVTNQPGHD
TISALPLSVLRNTRLDITRLLVSCFHQTPPRARCPFEGHRGTGSAGPQVPSPCPAPKARQSGGKPRSGAGGCQQILGSCS
PLSQSTTRRPPKRVAICTKWCGSVVTSPMRAASCPSGWARMAASTASAASGATTAISLPSLAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51793; Mature: 51793

Theoretical pI: Translated: 11.61; Mature: 11.61

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLRLHKNATTTPRIRAEIQVSKEPMRVLAQRFGVSVSTIARWKKRASVHDASHTPHRLQ
CEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHH
TTLTPAQESIVLVLRKSLGLSLDDLLAVVREFIHPTVSRAALHRMLKRHGVSAREALSVD
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
RPRTKPFKAYEPGFVHIDVKYLPQMADETTRRYLFVAIDRATRWVFVRVYASKSATNARR
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHEEEEEEEECCCEEEEEEEEECCCHHHHHH
FLKELHKAAAFRIRTILTDNGKEFTDRFITRGERTPTGRHQFDQLCEELGIEHRLTRPKH
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHCCCCCCC
PQTNGMVERFNGRIADILRTHHFHSGEELEATILRYVWLYNHQLPQKALGHVSPIQAMKQ
CCCCCHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH
WQRSHPELFNRRVTNQPGHDTISALPLSVLRNTRLDITRLLVSCFHQTPPRARCPFEGHR
HHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
GTGSAGPQVPSPCPAPKARQSGGKPRSGAGGCQQILGSCSPLSQSTTRRPPKRVAICTKW
CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHCCCCCHHHHHHHHH
CGSVVTSPMRAASCPSGWARMAASTASAASGATTAISLPSLAT
HHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure
MHLRLHKNATTTPRIRAEIQVSKEPMRVLAQRFGVSVSTIARWKKRASVHDASHTPHRLQ
CEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHH
TTLTPAQESIVLVLRKSLGLSLDDLLAVVREFIHPTVSRAALHRMLKRHGVSAREALSVD
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
RPRTKPFKAYEPGFVHIDVKYLPQMADETTRRYLFVAIDRATRWVFVRVYASKSATNARR
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHEEEEEEEECCCEEEEEEEEECCCHHHHHH
FLKELHKAAAFRIRTILTDNGKEFTDRFITRGERTPTGRHQFDQLCEELGIEHRLTRPKH
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHCCCCCCC
PQTNGMVERFNGRIADILRTHHFHSGEELEATILRYVWLYNHQLPQKALGHVSPIQAMKQ
CCCCCHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH
WQRSHPELFNRRVTNQPGHDTISALPLSVLRNTRLDITRLLVSCFHQTPPRARCPFEGHR
HHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
GTGSAGPQVPSPCPAPKARQSGGKPRSGAGGCQQILGSCSPLSQSTTRRPPKRVAICTKW
CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHCCCCCHHHHHHHHH
CGSVVTSPMRAASCPSGWARMAASTASAASGATTAISLPSLAT
HHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA