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The map label for this gene is tnpA

Identifier: 94310208

GI number: 94310208

Start: 1385440

End: 1386450

Strand: Reverse

Name: tnpA

Synonym: Rmet_1264

Alternate gene names: NA

Gene position: 1386450-1385440 (Counterclockwise)

Preceding gene: 94310209

Following gene: 94310207

Centisome position: 35.3

GC content: 62.91

Gene sequence:

>1011_bases
GTGGAAATACGTGTGTTGGCCCGCCAAGGATTAGGAATCCGGGAGATCTCGCGGGAACTGGGGCTGTCGAGGAACACCGT
GCGCAAATACTTACGCAGTTGTGCTGAGCAGGATCGTGCGCCGCGATCGGGGCGCACGCAGAAGCTCGATCCGTTCAAAA
CCTATCTGCATGACCGGGTTCGCGCAGCGCATCCGGCCTGGCTGCCGGCGACCGCGCTGCTGATCGAGATTCGCGCGATG
GGTTATGACGGAGGCCTGACGCGGCTGCGGGTCTATCTGCGGTCGCTGAAGTCGATCAAGGCGCCGGAGCCACTGGTACG
TTTCGAAACCGATCCGGGGCAGCAGATGCAGGTCGACTGGATCGTGTTTCGACGTGGCAAGCTGCCGCTGTCGGCATTCG
TTGCGACGCTCGGTTACAGTCGGGCGAGTTACGTCGAGTTCGTGACCGACGAACGATTGCCGACGCTGCTGGGATGCCAT
GAGCGCGCGTTCGACTTCTTCGGTGGGGTTCCTCGCGAGGTCCTGTACGACAACGTCAAGACGGTGGTGATTGGCCGAGA
CGCCTATGGTCCCGGACTGCATCGCTATCAACCGGCCTTCCTCGACTTTGCGAAGCACCACGGCTTCGTGCCGCGCCTGT
GCAAGCCCTACCGAGCGAAGACCAAGGGGAAGGTTGAGCGCTTCAACGGATACCTGCGCCGCAGCTTCTACAATCCGCTG
GCAAGCCGGCTCGCTCAGGATCGCCTCTCGCTTGACGCGACCACGGCGAACGCCGAGGTCGTGCGCTGGCTGAGAGATGT
CGCCAATGTGCGCATCCACGGCACGACTGGACAGTCGCCGCTCGAGCGTCTCCTGCTTGAGCAACCGAAGCTGCAGCAGT
TGCCGGAGCCGTGGCGCGCGAACCTGCCGTCAGCTTCCGTGCCGACGATGCCACCGCCGTCGCGGTTCGATGATACGCCG
CTGCAGCATCAGCTGTCAGTGTATCAAGCCCTGCTGACGGAGGCACGTTGA

Upstream 100 bases:

>100_bases
GCAGCACGTTGAAAATGACCCAGCGGCAGCACATTGGATTTGACCCACCCGGGTAGGATGGGCCCTTTTTGGAGGGCCAG
TGCTTACAAGGGAGGTAATC

Downstream 100 bases:

>100_bases
TGGACATCCAGCACGAACGTATCCTCGAAGCCTGTCGACAACTGCGGATCGACACGATGGGCGAGCAGTACAGCATGTTG
GCAGCTCGCGCGGCAGCGAA

Product: transposase (DDE site) ISRme20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MEIRVLARQGLGIREISRELGLSRNTVRKYLRSCAEQDRAPRSGRTQKLDPFKTYLHDRVRAAHPAWLPATALLIEIRAM
GYDGGLTRLRVYLRSLKSIKAPEPLVRFETDPGQQMQVDWIVFRRGKLPLSAFVATLGYSRASYVEFVTDERLPTLLGCH
ERAFDFFGGVPREVLYDNVKTVVIGRDAYGPGLHRYQPAFLDFAKHHGFVPRLCKPYRAKTKGKVERFNGYLRRSFYNPL
ASRLAQDRLSLDATTANAEVVRWLRDVANVRIHGTTGQSPLERLLLEQPKLQQLPEPWRANLPSASVPTMPPPSRFDDTP
LQHQLSVYQALLTEAR

Sequences:

>Translated_336_residues
MEIRVLARQGLGIREISRELGLSRNTVRKYLRSCAEQDRAPRSGRTQKLDPFKTYLHDRVRAAHPAWLPATALLIEIRAM
GYDGGLTRLRVYLRSLKSIKAPEPLVRFETDPGQQMQVDWIVFRRGKLPLSAFVATLGYSRASYVEFVTDERLPTLLGCH
ERAFDFFGGVPREVLYDNVKTVVIGRDAYGPGLHRYQPAFLDFAKHHGFVPRLCKPYRAKTKGKVERFNGYLRRSFYNPL
ASRLAQDRLSLDATTANAEVVRWLRDVANVRIHGTTGQSPLERLLLEQPKLQQLPEPWRANLPSASVPTMPPPSRFDDTP
LQHQLSVYQALLTEAR
>Mature_336_residues
MEIRVLARQGLGIREISRELGLSRNTVRKYLRSCAEQDRAPRSGRTQKLDPFKTYLHDRVRAAHPAWLPATALLIEIRAM
GYDGGLTRLRVYLRSLKSIKAPEPLVRFETDPGQQMQVDWIVFRRGKLPLSAFVATLGYSRASYVEFVTDERLPTLLGCH
ERAFDFFGGVPREVLYDNVKTVVIGRDAYGPGLHRYQPAFLDFAKHHGFVPRLCKPYRAKTKGKVERFNGYLRRSFYNPL
ASRLAQDRLSLDATTANAEVVRWLRDVANVRIHGTTGQSPLERLLLEQPKLQQLPEPWRANLPSASVPTMPPPSRFDDTP
LQHQLSVYQALLTEAR

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 38359; Mature: 38359

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRVLARQGLGIREISRELGLSRNTVRKYLRSCAEQDRAPRSGRTQKLDPFKTYLHDRV
CCEEEEHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RAAHPAWLPATALLIEIRAMGYDGGLTRLRVYLRSLKSIKAPEPLVRFETDPGQQMQVDW
HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEE
IVFRRGKLPLSAFVATLGYSRASYVEFVTDERLPTLLGCHERAFDFFGGVPREVLYDNVK
EEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCCE
TVVIGRDAYGPGLHRYQPAFLDFAKHHGFVPRLCKPYRAKTKGKVERFNGYLRRSFYNPL
EEEEECCCCCCCCHHCCHHHHHHHHHCCCCHHHCCCHHHCCCCHHHHHHHHHHHHHHHHH
ASRLAQDRLSLDATTANAEVVRWLRDVANVRIHGTTGQSPLERLLLEQPKLQQLPEPWRA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCCCHHHHHHHHCCCHHHHCCCCHHC
NLPSASVPTMPPPSRFDDTPLQHQLSVYQALLTEAR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEIRVLARQGLGIREISRELGLSRNTVRKYLRSCAEQDRAPRSGRTQKLDPFKTYLHDRV
CCEEEEHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RAAHPAWLPATALLIEIRAMGYDGGLTRLRVYLRSLKSIKAPEPLVRFETDPGQQMQVDW
HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEE
IVFRRGKLPLSAFVATLGYSRASYVEFVTDERLPTLLGCHERAFDFFGGVPREVLYDNVK
EEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCCE
TVVIGRDAYGPGLHRYQPAFLDFAKHHGFVPRLCKPYRAKTKGKVERFNGYLRRSFYNPL
EEEEECCCCCCCCHHCCHHHHHHHHHCCCCHHHCCCHHHCCCCHHHHHHHHHHHHHHHHH
ASRLAQDRLSLDATTANAEVVRWLRDVANVRIHGTTGQSPLERLLLEQPKLQQLPEPWRA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCCCHHHHHHHHCCCHHHHCCCCHHC
NLPSASVPTMPPPSRFDDTPLQHQLSVYQALLTEAR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]