Click here to switch to the map view.

The map label for this gene is yciO [H]

Identifier: 94310010

GI number: 94310010

Start: 1158271

End: 1158918

Strand: Direct

Name: yciO [H]

Synonym: Rmet_1065

Alternate gene names: 94310010

Gene position: 1158271-1158918 (Clockwise)

Preceding gene: 94310009

Following gene: 94310011

Centisome position: 29.49

GC content: 65.59

Gene sequence:

>648_bases
ATGTCCCAATACTTCGAGATTCATCCCGACAATCCGCAGGCGCGACTGGTCAAGCAGGCCGCGCAGATCGTGCGCCAGGG
CGGCCTGATCGCGCTCCCGACTGACTCGAGTTACGCGCTGGCTTGCCAGATCGACGATAAGGCCGCCGTGGAGCAGTTGC
GCCGTCTGCGCGAGATCGACGAGAAGCATCACCTGACGCTGATGTGCAGCGATTTGTCCGAACTTGGCAATTTCGCCCGG
GTGGACAACCGCCAGTACCGCTGGATCAAGGGCGCGACGCCCGGACCGTATGTGTTCATCCTGGAGGCGACGAAGGAAGT
GCCGCGCAGGCTGTCGCACCCGGCGCGCAAGACCATCGGCGTGCGCGTGCCCGAGCATCCGATTCCATTGGCGCTGGTGG
CCGAATTGGGTCAGCCGCTGATTTCCGCCACGCTGCAGTTGCCGGGCGACGACGCGCCGATGAACGACCCGGCAGAGATC
CGGGCGCGTCTGGAAAAGCGCCTCGACCTGGTGATCGACGGTGGTCCGGCGCCGGCTCAGCCGACCACGGTCATCGATCT
GACCAGCGGCGAGCCAGTTCTGGTGCGGGCGGGCAGGGGCGATGTGGAGCGCTTCGGCCTGAATGCGTCGGACTTCGCCA
CGACCTGA

Upstream 100 bases:

>100_bases
ACCTGGCGAGGGCCGTGTGGAACTCGGCGCGTTGCCCCCGCTGCCGGCCGATGTCACGCCGGTCTGGTACGACTGGTAAG
CGCCCTCATAGCCAGCCCAC

Downstream 100 bases:

>100_bases
CACACATTCGATGCCTCCGTGGGCAGGTTGCCCGATAGAATAGTCCGCATGGATTCCTCCCTGATTCAGACCTTCGCGGT
CTACGCCCTGCCTGTTCTGT

Product: putative translation factor (SUA5)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSQYFEIHPDNPQARLVKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREIDEKHHLTLMCSDLSELGNFAR
VDNRQYRWIKGATPGPYVFILEATKEVPRRLSHPARKTIGVRVPEHPIPLALVAELGQPLISATLQLPGDDAPMNDPAEI
RARLEKRLDLVIDGGPAPAQPTTVIDLTSGEPVLVRAGRGDVERFGLNASDFATT

Sequences:

>Translated_215_residues
MSQYFEIHPDNPQARLVKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREIDEKHHLTLMCSDLSELGNFAR
VDNRQYRWIKGATPGPYVFILEATKEVPRRLSHPARKTIGVRVPEHPIPLALVAELGQPLISATLQLPGDDAPMNDPAEI
RARLEKRLDLVIDGGPAPAQPTTVIDLTSGEPVLVRAGRGDVERFGLNASDFATT
>Mature_214_residues
SQYFEIHPDNPQARLVKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREIDEKHHLTLMCSDLSELGNFARV
DNRQYRWIKGATPGPYVFILEATKEVPRRLSHPARKTIGVRVPEHPIPLALVAELGQPLISATLQLPGDDAPMNDPAEIR
ARLEKRLDLVIDGGPAPAQPTTVIDLTSGEPVLVRAGRGDVERFGLNASDFATT

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=56.5853658536585, Blast_Score=245, Evalue=1e-66,
Organism=Escherichia coli, GI2367210, Length=192, Percent_Identity=26.5625, Blast_Score=64, Evalue=5e-12,
Organism=Drosophila melanogaster, GI78707274, Length=189, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23624; Mature: 23493

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQYFEIHPDNPQARLVKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREID
CCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHC
EKHHLTLMCSDLSELGNFARVDNRQYRWIKGATPGPYVFILEATKEVPRRLSHPARKTIG
HHCCEEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHCCCHHHHHC
VRVPEHPIPLALVAELGQPLISATLQLPGDDAPMNDPAEIRARLEKRLDLVIDGGPAPAQ
CCCCCCCCCHHHHHHCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCC
PTTVIDLTSGEPVLVRAGRGDVERFGLNASDFATT
CEEEEEECCCCEEEEECCCCCHHHHCCCHHHCCCC
>Mature Secondary Structure 
SQYFEIHPDNPQARLVKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREID
CCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHC
EKHHLTLMCSDLSELGNFARVDNRQYRWIKGATPGPYVFILEATKEVPRRLSHPARKTIG
HHCCEEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHCCCHHHHHC
VRVPEHPIPLALVAELGQPLISATLQLPGDDAPMNDPAEIRARLEKRLDLVIDGGPAPAQ
CCCCCCCCCHHHHHHCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCC
PTTVIDLTSGEPVLVRAGRGDVERFGLNASDFATT
CEEEEEECCCCEEEEECCCCCHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]