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The map label for this gene is ywhC [H]

Identifier: 94310011

GI number: 94310011

Start: 1158967

End: 1159632

Strand: Direct

Name: ywhC [H]

Synonym: Rmet_1066

Alternate gene names: 94310011

Gene position: 1158967-1159632 (Clockwise)

Preceding gene: 94310010

Following gene: 94310012

Centisome position: 29.5

GC content: 63.66

Gene sequence:

>666_bases
ATGGATTCCTCCCTGATTCAGACCTTCGCGGTCTACGCCCTGCCTGTTCTGTTCGCCATCACGCTGCACGAGGCCGCGCA
TGGCTATGTGGCCAAGCATTTTGGCGACAACACCGCCTACCTGCTTGGCCGGGTAAGCCTGAACCCGGTACGGCACATTG
ATCCGATCGGCACGGTGGCGGTGCCCCTGCTCCTGTACTTCCTGACTGCCGGCCAGTTCGTCTTCGGCTTCGCCAAGCCT
GTGCCGGTGGCGTTCGATCGCCTGCGCAATCCGCGCTGGCATGGCATGTGGGTGGCGCTGGCCGGCCCGGCCAGCAATAT
CGTCCAGGCGTTCGCGTGGGCGCTGGTGGCCATTGGTCTGGCGCTGGCACATATCCAGGAGCCGTTCTGGAGCGAAATGG
CCCGTGCTGGCGTACTGGTCAATACGGTGGTGGCGGCGTTCAACCTGTTCCCGATTCCACCGCTCGATGGTGGCCGGGTA
CTGACGGCGCTGCTGCCGCAGCGGCTTGCCGGCGTCATGGCGCGCATCGAGCCCTATGGCATTTTTGTCGTTCTCGCGCT
GGTGGCGGCGGGTGTGATCACCAAGATCTGGATGCGTCCGGTCATGAACGGGCTGCTATCGATCGTCGAGTTGATGCTGC
GTCCGGTCATGTGGCTGCTCCAGTGA

Upstream 100 bases:

>100_bases
GGGCGATGTGGAGCGCTTCGGCCTGAATGCGTCGGACTTCGCCACGACCTGACACACATTCGATGCCTCCGTGGGCAGGT
TGCCCGATAGAATAGTCCGC

Downstream 100 bases:

>100_bases
CGCCAGTCTCCGTCTTTCCCAATCCTTGCCTGTCCCGCGCATGACCCTGACACACCCGCCGCTCGCGGCGCCATCGCCCT
GGCTGACCCGCTGGGCGCAT

Product: Zn-dependent membrane-bound protease, M50 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDSSLIQTFAVYALPVLFAITLHEAAHGYVAKHFGDNTAYLLGRVSLNPVRHIDPIGTVAVPLLLYFLTAGQFVFGFAKP
VPVAFDRLRNPRWHGMWVALAGPASNIVQAFAWALVAIGLALAHIQEPFWSEMARAGVLVNTVVAAFNLFPIPPLDGGRV
LTALLPQRLAGVMARIEPYGIFVVLALVAAGVITKIWMRPVMNGLLSIVELMLRPVMWLLQ

Sequences:

>Translated_221_residues
MDSSLIQTFAVYALPVLFAITLHEAAHGYVAKHFGDNTAYLLGRVSLNPVRHIDPIGTVAVPLLLYFLTAGQFVFGFAKP
VPVAFDRLRNPRWHGMWVALAGPASNIVQAFAWALVAIGLALAHIQEPFWSEMARAGVLVNTVVAAFNLFPIPPLDGGRV
LTALLPQRLAGVMARIEPYGIFVVLALVAAGVITKIWMRPVMNGLLSIVELMLRPVMWLLQ
>Mature_221_residues
MDSSLIQTFAVYALPVLFAITLHEAAHGYVAKHFGDNTAYLLGRVSLNPVRHIDPIGTVAVPLLLYFLTAGQFVFGFAKP
VPVAFDRLRNPRWHGMWVALAGPASNIVQAFAWALVAIGLALAHIQEPFWSEMARAGVLVNTVVAAFNLFPIPPLDGGRV
LTALLPQRLAGVMARIEPYGIFVVLALVAAGVITKIWMRPVMNGLLSIVELMLRPVMWLLQ

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24115; Mature: 24115

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSLIQTFAVYALPVLFAITLHEAAHGYVAKHFGDNTAYLLGRVSLNPVRHIDPIGTVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCHHHCCCHHHHH
VPLLLYFLTAGQFVFGFAKPVPVAFDRLRNPRWHGMWVALAGPASNIVQAFAWALVAIGL
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
ALAHIQEPFWSEMARAGVLVNTVVAAFNLFPIPPLDGGRVLTALLPQRLAGVMARIEPYG
HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
IFVVLALVAAGVITKIWMRPVMNGLLSIVELMLRPVMWLLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDSSLIQTFAVYALPVLFAITLHEAAHGYVAKHFGDNTAYLLGRVSLNPVRHIDPIGTVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCHHHCCCHHHHH
VPLLLYFLTAGQFVFGFAKPVPVAFDRLRNPRWHGMWVALAGPASNIVQAFAWALVAIGL
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
ALAHIQEPFWSEMARAGVLVNTVVAAFNLFPIPPLDGGRVLTALLPQRLAGVMARIEPYG
HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
IFVVLALVAAGVITKIWMRPVMNGLLSIVELMLRPVMWLLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]