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The map label for this gene is mmgC [H]

Identifier: 94309053

GI number: 94309053

Start: 115189

End: 116319

Strand: Direct

Name: mmgC [H]

Synonym: Rmet_0108

Alternate gene names: 94309053

Gene position: 115189-116319 (Clockwise)

Preceding gene: 94309052

Following gene: 94309054

Centisome position: 2.93

GC content: 65.52

Gene sequence:

>1131_bases
ATGCTGCTGACCCCTGAACAGGAAATGATCCGTGACGCCGTGCGGCAGTTCGCGCAGGACGTCATCGCGCCGCAGGCCGC
CCGATGGGATCGCGACAAGACGTTCCCGAAGGACGTGCACAAGGAACTGGCGCGTCTGGGTGCCTACGGCGTGGCCGTGC
CCGAAGCCCTTGGCGGCGCCGGGCTCGACTATCTGTCGCTCGCGCTGATCCTGGAAGAGATCGCGGCCGGAGACGGCGGC
ACCTCCACTGTCATCAGCGTCAACAACTGCCCGGTGTGCAGCATGCTGATGGCCTTCGCCAGCGACGCGCAGAAGCAGCA
GTGGCTGGTGCCGCTGGCGCAAGGTGACATGCTCGGCGCATTCTGCCTGACCGAGCCGCACGTCGGCTCCGACGCATCGG
CGTTGCGCACCACGGCCACGCGCGATGGCGACCACTACGTGCTCAACGGCGTGAAGCAGTTCATCACCAGTGGCAAACAT
GCCGACGTGGCGATCGTGATGGCCGTGACCGACAAGGCCGCGGGCAAACGCGGCATCAGCGCATTCCTGGTGCCGACGTC
AACGCCCGGCTATATCGTCGCGCGTCTGGAGGAAAAGCTGGGCCAGCACTCTTCCGACACCGCGCAGATCGTGTTCGAGA
ACTGCCGGATTCCGGCCGCGAACATGCTTGGCGAGGAGGGCGCCGGCTACAAGATGGCGCTCTCCGGTCTCGAAGGTGGC
CGCATCGGTATCGCTTCCCAAAGCATCGGCATGGCGCGCGCGGCATTCGAGGCGGCGCTGGCCTACGCCAAGGAGCGCGA
GAGCTTCGGGCAGCCGCTGTTCCAGCACCAGGCCGTGCAGTTCCGGCTTGCCGATATGGCGACGCAGATCGACGTGGCGC
GCCAGATGGTGTGGCATGCCGCATCGCTCAAGGATGCCGGCCGGCCCTGCCTGAAGGAAGCGGCCATGGCCAAGCTTTTC
GCCAGCGAGATGGCCGAGCGGGTATGCTCGGATGCCATCCAGGTGTTCGGTGGCTACGGCTACGTGACCGATTTCCCCGT
CGAGCGCATCTATCGCGATGTGCGCGTGTGCCAGATCTATGAAGGGACCAGCGATATCCAGAAGATCCTGATCGCCCGCG
CGCTTGGCTGA

Upstream 100 bases:

>100_bases
GGGTATGCGCCGCGTGCTGGCCGGCGTAGCGCGTCACGATAACGGCAGCTTCCACAACTACGACGGTACGTCGATTCCCT
GGTAAGAGACCCGGTACAAC

Downstream 100 bases:

>100_bases
CAGGCATCTCGAATACGAAGACGAACACAAGTACGAACACGAGTATCCGCACTTTCCTCAACTGTTGTCCGTGAACCGGA
GCCTTTGCGATGACCGCCCC

Product: acyl-CoA dehydrogenase, short-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MLLTPEQEMIRDAVRQFAQDVIAPQAARWDRDKTFPKDVHKELARLGAYGVAVPEALGGAGLDYLSLALILEEIAAGDGG
TSTVISVNNCPVCSMLMAFASDAQKQQWLVPLAQGDMLGAFCLTEPHVGSDASALRTTATRDGDHYVLNGVKQFITSGKH
ADVAIVMAVTDKAAGKRGISAFLVPTSTPGYIVARLEEKLGQHSSDTAQIVFENCRIPAANMLGEEGAGYKMALSGLEGG
RIGIASQSIGMARAAFEAALAYAKERESFGQPLFQHQAVQFRLADMATQIDVARQMVWHAASLKDAGRPCLKEAAMAKLF
ASEMAERVCSDAIQVFGGYGYVTDFPVERIYRDVRVCQIYEGTSDIQKILIARALG

Sequences:

>Translated_376_residues
MLLTPEQEMIRDAVRQFAQDVIAPQAARWDRDKTFPKDVHKELARLGAYGVAVPEALGGAGLDYLSLALILEEIAAGDGG
TSTVISVNNCPVCSMLMAFASDAQKQQWLVPLAQGDMLGAFCLTEPHVGSDASALRTTATRDGDHYVLNGVKQFITSGKH
ADVAIVMAVTDKAAGKRGISAFLVPTSTPGYIVARLEEKLGQHSSDTAQIVFENCRIPAANMLGEEGAGYKMALSGLEGG
RIGIASQSIGMARAAFEAALAYAKERESFGQPLFQHQAVQFRLADMATQIDVARQMVWHAASLKDAGRPCLKEAAMAKLF
ASEMAERVCSDAIQVFGGYGYVTDFPVERIYRDVRVCQIYEGTSDIQKILIARALG
>Mature_376_residues
MLLTPEQEMIRDAVRQFAQDVIAPQAARWDRDKTFPKDVHKELARLGAYGVAVPEALGGAGLDYLSLALILEEIAAGDGG
TSTVISVNNCPVCSMLMAFASDAQKQQWLVPLAQGDMLGAFCLTEPHVGSDASALRTTATRDGDHYVLNGVKQFITSGKH
ADVAIVMAVTDKAAGKRGISAFLVPTSTPGYIVARLEEKLGQHSSDTAQIVFENCRIPAANMLGEEGAGYKMALSGLEGG
RIGIASQSIGMARAAFEAALAYAKERESFGQPLFQHQAVQFRLADMATQIDVARQMVWHAASLKDAGRPCLKEAAMAKLF
ASEMAERVCSDAIQVFGGYGYVTDFPVERIYRDVRVCQIYEGTSDIQKILIARALG

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=369, Percent_Identity=49.0514905149051, Blast_Score=363, Evalue=1e-100,
Organism=Homo sapiens, GI4501859, Length=373, Percent_Identity=41.0187667560322, Blast_Score=308, Evalue=6e-84,
Organism=Homo sapiens, GI7656849, Length=377, Percent_Identity=40.3183023872679, Blast_Score=288, Evalue=5e-78,
Organism=Homo sapiens, GI226958412, Length=377, Percent_Identity=37.4005305039788, Blast_Score=275, Evalue=5e-74,
Organism=Homo sapiens, GI187960098, Length=374, Percent_Identity=37.1657754010695, Blast_Score=271, Evalue=7e-73,
Organism=Homo sapiens, GI4557231, Length=374, Percent_Identity=37.1657754010695, Blast_Score=271, Evalue=7e-73,
Organism=Homo sapiens, GI226958414, Length=341, Percent_Identity=37.8299120234604, Blast_Score=255, Evalue=6e-68,
Organism=Homo sapiens, GI4501857, Length=376, Percent_Identity=35.9042553191489, Blast_Score=246, Evalue=2e-65,
Organism=Homo sapiens, GI21361497, Length=364, Percent_Identity=35.989010989011, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI4557235, Length=369, Percent_Identity=35.5013550135501, Blast_Score=220, Evalue=2e-57,
Organism=Homo sapiens, GI76496475, Length=369, Percent_Identity=35.5013550135501, Blast_Score=219, Evalue=2e-57,
Organism=Homo sapiens, GI4503943, Length=376, Percent_Identity=29.5212765957447, Blast_Score=172, Evalue=5e-43,
Organism=Homo sapiens, GI7669494, Length=362, Percent_Identity=29.0055248618785, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI48976061, Length=403, Percent_Identity=28.7841191066998, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI211971008, Length=403, Percent_Identity=28.7841191066998, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI38505218, Length=354, Percent_Identity=31.9209039548023, Blast_Score=146, Evalue=4e-35,
Organism=Homo sapiens, GI218563752, Length=257, Percent_Identity=23.3463035019455, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI87081958, Length=375, Percent_Identity=33.0666666666667, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1786223, Length=374, Percent_Identity=29.9465240641711, Blast_Score=168, Evalue=7e-43,
Organism=Escherichia coli, GI87082384, Length=320, Percent_Identity=30, Blast_Score=103, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17506239, Length=374, Percent_Identity=38.7700534759358, Blast_Score=287, Evalue=5e-78,
Organism=Caenorhabditis elegans, GI17508101, Length=371, Percent_Identity=39.0835579514825, Blast_Score=280, Evalue=1e-75,
Organism=Caenorhabditis elegans, GI17569725, Length=376, Percent_Identity=36.7021276595745, Blast_Score=273, Evalue=1e-73,
Organism=Caenorhabditis elegans, GI17570075, Length=376, Percent_Identity=37.7659574468085, Blast_Score=272, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17534899, Length=379, Percent_Identity=36.9393139841689, Blast_Score=272, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17533517, Length=376, Percent_Identity=38.031914893617, Blast_Score=265, Evalue=4e-71,
Organism=Caenorhabditis elegans, GI17538396, Length=375, Percent_Identity=34.1333333333333, Blast_Score=253, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI71985184, Length=379, Percent_Identity=35.6200527704486, Blast_Score=223, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI71990804, Length=276, Percent_Identity=39.4927536231884, Blast_Score=221, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI17551932, Length=368, Percent_Identity=30.7065217391304, Blast_Score=191, Evalue=5e-49,
Organism=Caenorhabditis elegans, GI17505929, Length=377, Percent_Identity=29.7082228116711, Blast_Score=185, Evalue=4e-47,
Organism=Caenorhabditis elegans, GI32563615, Length=230, Percent_Identity=39.1304347826087, Blast_Score=181, Evalue=7e-46,
Organism=Caenorhabditis elegans, GI17534353, Length=375, Percent_Identity=29.3333333333333, Blast_Score=174, Evalue=9e-44,
Organism=Caenorhabditis elegans, GI71985192, Length=326, Percent_Identity=33.7423312883436, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI71982178, Length=271, Percent_Identity=32.1033210332103, Blast_Score=168, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI17531909, Length=241, Percent_Identity=35.2697095435685, Blast_Score=150, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17562446, Length=392, Percent_Identity=28.5714285714286, Blast_Score=131, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI17531913, Length=177, Percent_Identity=35.5932203389831, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI86563383, Length=275, Percent_Identity=30.5454545454545, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI86563381, Length=275, Percent_Identity=30.5454545454545, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21356377, Length=370, Percent_Identity=45.6756756756757, Blast_Score=355, Evalue=3e-98,
Organism=Drosophila melanogaster, GI24646207, Length=373, Percent_Identity=43.6997319034853, Blast_Score=322, Evalue=2e-88,
Organism=Drosophila melanogaster, GI24666513, Length=374, Percent_Identity=39.572192513369, Blast_Score=296, Evalue=2e-80,
Organism=Drosophila melanogaster, GI24660351, Length=377, Percent_Identity=36.604774535809, Blast_Score=264, Evalue=8e-71,
Organism=Drosophila melanogaster, GI21355753, Length=378, Percent_Identity=34.9206349206349, Blast_Score=229, Evalue=2e-60,
Organism=Drosophila melanogaster, GI281363737, Length=383, Percent_Identity=34.9869451697128, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI19920834, Length=377, Percent_Identity=31.2997347480106, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281365206, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24585193, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24585195, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24585191, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221473076, Length=314, Percent_Identity=24.5222929936306, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550141, Length=314, Percent_Identity=24.5222929936306, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40410; Mature: 40410

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTPEQEMIRDAVRQFAQDVIAPQAARWDRDKTFPKDVHKELARLGAYGVAVPEALGGA
CCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCC
GLDYLSLALILEEIAAGDGGTSTVISVNNCPVCSMLMAFASDAQKQQWLVPLAQGDMLGA
CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHEEEEECCCCCEEH
FCLTEPHVGSDASALRTTATRDGDHYVLNGVKQFITSGKHADVAIVMAVTDKAAGKRGIS
HCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
AFLVPTSTPGYIVARLEEKLGQHSSDTAQIVFENCRIPAANMLGEEGAGYKMALSGLEGG
EEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCEEEECCCCCC
RIGIASQSIGMARAAFEAALAYAKERESFGQPLFQHQAVQFRLADMATQIDVARQMVWHA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLKDAGRPCLKEAAMAKLFASEMAERVCSDAIQVFGGYGYVTDFPVERIYRDVRVCQIY
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEE
EGTSDIQKILIARALG
CCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLTPEQEMIRDAVRQFAQDVIAPQAARWDRDKTFPKDVHKELARLGAYGVAVPEALGGA
CCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCC
GLDYLSLALILEEIAAGDGGTSTVISVNNCPVCSMLMAFASDAQKQQWLVPLAQGDMLGA
CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHEEEEECCCCCEEH
FCLTEPHVGSDASALRTTATRDGDHYVLNGVKQFITSGKHADVAIVMAVTDKAAGKRGIS
HCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
AFLVPTSTPGYIVARLEEKLGQHSSDTAQIVFENCRIPAANMLGEEGAGYKMALSGLEGG
EEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCEEEECCCCCC
RIGIASQSIGMARAAFEAALAYAKERESFGQPLFQHQAVQFRLADMATQIDVARQMVWHA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLKDAGRPCLKEAAMAKLFASEMAERVCSDAIQVFGGYGYVTDFPVERIYRDVRVCQIY
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEE
EGTSDIQKILIARALG
CCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8759838; 8969508; 9384377 [H]