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The map label for this gene is ybgK [H]

Identifier: 94309008

GI number: 94309008

Start: 71065

End: 72084

Strand: Direct

Name: ybgK [H]

Synonym: Rmet_0063

Alternate gene names: 94309008

Gene position: 71065-72084 (Clockwise)

Preceding gene: 94309007

Following gene: 94309009

Centisome position: 1.81

GC content: 70.98

Gene sequence:

>1020_bases
GTGATCGAGATCATTCGGCCTGGCGCGCAGGCATCGGTGCAGGACCTCGGCCGTGTGGGCTTCCGCCGCTTCGGCGTGGG
CCGCTCGGGCGCGGCTGACGACCTGGCGCTGCGCGTCGGCAATCGCCTGCTCGGCAACGATCCCGGCGCGGCGGCGATCG
AGTTCACACTGGGCCGCGCCGCCGTGCGTTTTGAGGCCGACATGCGCGTGGCGCTGACGGGCGCCGAATGCAGCGCGAAT
CTTGACGGTGTCCCGGTCTGGTCGTGGCACGCGTTCGACGTGCGCCGTGGCGAGACGCTCACGCTGCCGTCGCCGCGCGG
CGGCACGCGCACCTATCTCTGCGTGGCCGGTGGCATCGACGTGCCCCTGGTCATGAATTCGCGTAGCACCGATCTCAAGT
CCGGTTTTGGCGGATTCGAAGGCCGCGTGCTGCGTGAAGGCGATCGCCTGCCCGTGGGCCGGCCCGGCATCGAGCAGGGG
CAGGACTGGGTGGGCGTGGCCGCGCCGGGTTGGGCGCTGCCCGGGCAAGACGGTGGCAATGCCATCGCAATCCGCCTGCT
GCCCGGCCCCGAATACGCCGACTTCGAGCCGGCGTCGCAAGCCGCGCTATGGCAGTCCGAATGGACCATCACGCCGCAGA
GCAACCGCATGGGCCTGCGTCTGCAAGGTCCCGCATTGGCACGCCGAGCCGAGCGCTCGGCCGATCTGTTGTCGCACGGC
GTGGTGCCGGGCGTGATGCAGGTGCCGCCGTCAGGCCAGCCTATCGCCCTGATGAGCGATGCGCAGACCACGGGCGGCTA
TCCGAAGATCGGCACCGTGATTGGCGCGGACCTGTGGCGACTGGCGCAGGTGCCGCTGGGCGCGACCGTGCGCTTCCGCC
AGGTCACGCTCGAGGAAGCCGCCGCCGCGCAGGCCGAGGTGGACCGCTACCTGCGCCAGATCGACCAGGCACTGGCATGG
CAGCGCGACGGCATGCAGATCGCCGCGCGGCGCCGCGCAACCACGCGCTTTGTCGCCTGA

Upstream 100 bases:

>100_bases
TCGGGCGTACCGACGCCCAGCTATTCGTGGCCGATCGCGATCCGCCGTCGTTGTTCGCGCCCGGCGATACCGTGCGTTTT
GTTGCCGAGGAGATCCTGCT

Downstream 100 bases:

>100_bases
ACGCCCAGACGATGCAACGACGCAACGAAACAACGAATTCCAATCGCCTGCCCCGACATATCCCCGGAGAACGCACATGC
AAATCGACCTGAATGCCGAC

Product: putative allophanate hydrolase subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MIEIIRPGAQASVQDLGRVGFRRFGVGRSGAADDLALRVGNRLLGNDPGAAAIEFTLGRAAVRFEADMRVALTGAECSAN
LDGVPVWSWHAFDVRRGETLTLPSPRGGTRTYLCVAGGIDVPLVMNSRSTDLKSGFGGFEGRVLREGDRLPVGRPGIEQG
QDWVGVAAPGWALPGQDGGNAIAIRLLPGPEYADFEPASQAALWQSEWTITPQSNRMGLRLQGPALARRAERSADLLSHG
VVPGVMQVPPSGQPIALMSDAQTTGGYPKIGTVIGADLWRLAQVPLGATVRFRQVTLEEAAAAQAEVDRYLRQIDQALAW
QRDGMQIAARRRATTRFVA

Sequences:

>Translated_339_residues
MIEIIRPGAQASVQDLGRVGFRRFGVGRSGAADDLALRVGNRLLGNDPGAAAIEFTLGRAAVRFEADMRVALTGAECSAN
LDGVPVWSWHAFDVRRGETLTLPSPRGGTRTYLCVAGGIDVPLVMNSRSTDLKSGFGGFEGRVLREGDRLPVGRPGIEQG
QDWVGVAAPGWALPGQDGGNAIAIRLLPGPEYADFEPASQAALWQSEWTITPQSNRMGLRLQGPALARRAERSADLLSHG
VVPGVMQVPPSGQPIALMSDAQTTGGYPKIGTVIGADLWRLAQVPLGATVRFRQVTLEEAAAAQAEVDRYLRQIDQALAW
QRDGMQIAARRRATTRFVA
>Mature_339_residues
MIEIIRPGAQASVQDLGRVGFRRFGVGRSGAADDLALRVGNRLLGNDPGAAAIEFTLGRAAVRFEADMRVALTGAECSAN
LDGVPVWSWHAFDVRRGETLTLPSPRGGTRTYLCVAGGIDVPLVMNSRSTDLKSGFGGFEGRVLREGDRLPVGRPGIEQG
QDWVGVAAPGWALPGQDGGNAIAIRLLPGPEYADFEPASQAALWQSEWTITPQSNRMGLRLQGPALARRAERSADLLSHG
VVPGVMQVPPSGQPIALMSDAQTTGGYPKIGTVIGADLWRLAQVPLGATVRFRQVTLEEAAAAQAEVDRYLRQIDQALAW
QRDGMQIAARRRATTRFVA

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=321, Percent_Identity=52.0249221183801, Blast_Score=303, Evalue=9e-84,
Organism=Saccharomyces cerevisiae, GI6319685, Length=335, Percent_Identity=30.7462686567164, Blast_Score=146, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 36225; Mature: 36225

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEIIRPGAQASVQDLGRVGFRRFGVGRSGAADDLALRVGNRLLGNDPGAAAIEFTLGRA
CCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHCCCCCCEEEEEEECCE
AVRFEADMRVALTGAECSANLDGVPVWSWHAFDVRRGETLTLPSPRGGTRTYLCVAGGID
EEEEECCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEECCCCCCCCEEEEEEECCCC
VPLVMNSRSTDLKSGFGGFEGRVLREGDRLPVGRPGIEQGQDWVGVAAPGWALPGQDGGN
EEEEECCCCCCHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
AIAIRLLPGPEYADFEPASQAALWQSEWTITPQSNRMGLRLQGPALARRAERSADLLSHG
EEEEEEECCCCCCCCCCCHHHHEECCCEEECCCCCCCEEEECCHHHHHHHHHHHHHHHCC
VVPGVMQVPPSGQPIALMSDAQTTGGYPKIGTVIGADLWRLAQVPLGATVRFRQVTLEEA
CCCCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHH
AAAQAEVDRYLRQIDQALAWQRDGMQIAARRRATTRFVA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEIIRPGAQASVQDLGRVGFRRFGVGRSGAADDLALRVGNRLLGNDPGAAAIEFTLGRA
CCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHCCCCCCEEEEEEECCE
AVRFEADMRVALTGAECSANLDGVPVWSWHAFDVRRGETLTLPSPRGGTRTYLCVAGGID
EEEEECCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEECCCCCCCCEEEEEEECCCC
VPLVMNSRSTDLKSGFGGFEGRVLREGDRLPVGRPGIEQGQDWVGVAAPGWALPGQDGGN
EEEEECCCCCCHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
AIAIRLLPGPEYADFEPASQAALWQSEWTITPQSNRMGLRLQGPALARRAERSADLLSHG
EEEEEEECCCCCCCCCCCHHHHEECCCEEECCCCCCCEEEECCHHHHHHHHHHHHHHHCC
VVPGVMQVPPSGQPIALMSDAQTTGGYPKIGTVIGADLWRLAQVPLGATVRFRQVTLEEA
CCCCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHH
AAAQAEVDRYLRQIDQALAWQRDGMQIAARRRATTRFVA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]