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The map label for this gene is ybgJ [H]

Identifier: 94309007

GI number: 94309007

Start: 70418

End: 71068

Strand: Direct

Name: ybgJ [H]

Synonym: Rmet_0062

Alternate gene names: 94309007

Gene position: 70418-71068 (Clockwise)

Preceding gene: 94309006

Following gene: 94309008

Centisome position: 1.79

GC content: 68.36

Gene sequence:

>651_bases
ATGCCTCAATGCACCGTCCATCGTCTGGCTGAACAGGCGCTGCTTTACAGCGTCGAGCCGCCGGCGTCGCTCGATGTCCA
GCGACGTATCTGGGCGATGGCCGCGCGTGCCGCCGACTGGCGGGGTGTGGTCGATGTGGTGCCGGGCATGAACAACCTCA
CCGTGACCTTCGATGGCACGGCGGACGTGGCAGCGCTGGAGCGCAACCTGAAGCTCGCCTGGGCTTCGGGAGAGGCGCGC
AATGCGACGGGCAGGCTCGTGGAAGTCCCGGTCCGCTACGGCGGCGAGTTCGGGCCCGATCTGGCCGATGTGGCCGCCCA
CACGGGCCTGACACCCGCTGAGGTCGTGCACCGCCATGCCGCTGGCGAGTACGTGGTCTATTTCCTTGGATTCCAGCCCG
GCTTTACCTACATGGGCGGGCTTGCGCCCGAATTGGCCACGCCGCGCCGCCGCGAGCCGCGTCTGGCCGTGCCGGCTGGC
GCGGTGGGCATTGGTGGCGAGCAGACCGGCATCTACCCGGCCGTGCTGCCGGGTGGCTGGCAACTGATCGGGCGTACCGA
CGCCCAGCTATTCGTGGCCGATCGCGATCCGCCGTCGTTGTTCGCGCCCGGCGATACCGTGCGTTTTGTTGCCGAGGAGA
TCCTGCTGTGA

Upstream 100 bases:

>100_bases
TCGATTGAGTCGCGTCGGCTTCATCGGCGAGTCAGCACCGTGGTCTTGTGGCGCCTACACTGCCTGAGACTGCGGGCTGC
AGTTACCTCGCGAGTTCCAA

Downstream 100 bases:

>100_bases
TCGAGATCATTCGGCCTGGCGCGCAGGCATCGGTGCAGGACCTCGGCCGTGTGGGCTTCCGCCGCTTCGGCGTGGGCCGC
TCGGGCGCGGCTGACGACCT

Product: putative allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MPQCTVHRLAEQALLYSVEPPASLDVQRRIWAMAARAADWRGVVDVVPGMNNLTVTFDGTADVAALERNLKLAWASGEAR
NATGRLVEVPVRYGGEFGPDLADVAAHTGLTPAEVVHRHAAGEYVVYFLGFQPGFTYMGGLAPELATPRRREPRLAVPAG
AVGIGGEQTGIYPAVLPGGWQLIGRTDAQLFVADRDPPSLFAPGDTVRFVAEEILL

Sequences:

>Translated_216_residues
MPQCTVHRLAEQALLYSVEPPASLDVQRRIWAMAARAADWRGVVDVVPGMNNLTVTFDGTADVAALERNLKLAWASGEAR
NATGRLVEVPVRYGGEFGPDLADVAAHTGLTPAEVVHRHAAGEYVVYFLGFQPGFTYMGGLAPELATPRRREPRLAVPAG
AVGIGGEQTGIYPAVLPGGWQLIGRTDAQLFVADRDPPSLFAPGDTVRFVAEEILL
>Mature_215_residues
PQCTVHRLAEQALLYSVEPPASLDVQRRIWAMAARAADWRGVVDVVPGMNNLTVTFDGTADVAALERNLKLAWASGEARN
ATGRLVEVPVRYGGEFGPDLADVAAHTGLTPAEVVHRHAAGEYVVYFLGFQPGFTYMGGLAPELATPRRREPRLAVPAGA
VGIGGEQTGIYPAVLPGGWQLIGRTDAQLFVADRDPPSLFAPGDTVRFVAEEILL

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=215, Percent_Identity=52.093023255814, Blast_Score=218, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23128; Mature: 22996

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQCTVHRLAEQALLYSVEPPASLDVQRRIWAMAARAADWRGVVDVVPGMNNLTVTFDGT
CCCHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCC
ADVAALERNLKLAWASGEARNATGRLVEVPVRYGGEFGPDLADVAAHTGLTPAEVVHRHA
CCHHHHHCCEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHCCCCHHHHHHHHC
AGEYVVYFLGFQPGFTYMGGLAPELATPRRREPRLAVPAGAVGIGGEQTGIYPAVLPGGW
CCCEEEEEEECCCCCHHHCCCCHHHCCCCCCCCCEECCCCCEECCCCCCCCEEEECCCCE
QLIGRTDAQLFVADRDPPSLFAPGDTVRFVAEEILL
EEEECCCCEEEEECCCCCCEECCCCHHHHHHHHHCC
>Mature Secondary Structure 
PQCTVHRLAEQALLYSVEPPASLDVQRRIWAMAARAADWRGVVDVVPGMNNLTVTFDGT
CCHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCC
ADVAALERNLKLAWASGEARNATGRLVEVPVRYGGEFGPDLADVAAHTGLTPAEVVHRHA
CCHHHHHCCEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHCCCCHHHHHHHHC
AGEYVVYFLGFQPGFTYMGGLAPELATPRRREPRLAVPAGAVGIGGEQTGIYPAVLPGGW
CCCEEEEEEECCCCCHHHCCCCHHHCCCCCCCCCEECCCCCEECCCCCCCCEEEECCCCE
QLIGRTDAQLFVADRDPPSLFAPGDTVRFVAEEILL
EEEECCCCEEEEECCCCCCEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]