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The map label for this gene is lamB [C]

Identifier: 94309009

GI number: 94309009

Start: 72161

End: 72901

Strand: Direct

Name: lamB [C]

Synonym: Rmet_0064

Alternate gene names: 94309009

Gene position: 72161-72901 (Clockwise)

Preceding gene: 94309008

Following gene: 94309010

Centisome position: 1.84

GC content: 66.4

Gene sequence:

>741_bases
ATGCAAATCGACCTGAATGCCGACCTCGGCGAAGGCTGCGGCAATGACGAAGCCCTGCTGGCGCTGATCAGCTCCGCCAA
CATCGCCTGCGGCTGGCACGCGGGCGATGCCGCCACGATGCTGCAGACCGTGAAATGGGCGTTGGCCAACAAGGTGTCGA
TCGGCGCGCATCCGAGCTTCCCGGATCGCGAGAACTTCGGCCGCACCGAGATGCAGCGCGATCCCGAGGCGGTCTATGCC
GATGTGCTGTACCAGATCGGCGCGCTCGATGCGATGGTGCGCGCGCAGGGCGGCGAACTCGCCCACGTGAAGCCGCACGG
CGCGCTCTACAACATGGCCGTGCGCGACGCAAAGCTGTGCGAGGCGATCGTGCGCGCCGTGCGTGACTACGACTCCGACC
TGGTCTTCTTTGGCCTGGCCAACAGCCAGATGATCGACATCGCACGCGCGGCGGGCCTGCGCGTGAAAGAAGAAGTCTTC
GCCGACCGCGGCTATAACCCCGATGGCACGCTGGTCAAGCGTGGCACGCCGGGCGCGTTGCACGAGGACGAAGACGTGGC
CCTGAACCAGACGCTGTCGATGGTCCGCGACAAGCAGGTGCGCGCGATTGATGGCACCTGGGTACCGATTCGCGCCGAAA
CCGTGTGTCTGCACGGCGACGGTGCTCACGCGCTTGCCTTCGCGCGCCGCATCCGGGAACGGCTCGGCGCGGAAGGCATT
GCCATCCGTGCCGGCAACTGA

Upstream 100 bases:

>100_bases
GCAACCACGCGCTTTGTCGCCTGAACGCCCAGACGATGCAACGACGCAACGAAACAACGAATTCCAATCGCCTGCCCCGA
CATATCCCCGGAGAACGCAC

Downstream 100 bases:

>100_bases
CGAGCCATCACGACGGGCTCACTCACGCGCTGGTTTTGCTCCCCCCAAACCTTATCCGGTGCACTCCATGGAAACCGCAC
TCAATCTTTGGCCCCTGCTA

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MQIDLNADLGEGCGNDEALLALISSANIACGWHAGDAATMLQTVKWALANKVSIGAHPSFPDRENFGRTEMQRDPEAVYA
DVLYQIGALDAMVRAQGGELAHVKPHGALYNMAVRDAKLCEAIVRAVRDYDSDLVFFGLANSQMIDIARAAGLRVKEEVF
ADRGYNPDGTLVKRGTPGALHEDEDVALNQTLSMVRDKQVRAIDGTWVPIRAETVCLHGDGAHALAFARRIRERLGAEGI
AIRAGN

Sequences:

>Translated_246_residues
MQIDLNADLGEGCGNDEALLALISSANIACGWHAGDAATMLQTVKWALANKVSIGAHPSFPDRENFGRTEMQRDPEAVYA
DVLYQIGALDAMVRAQGGELAHVKPHGALYNMAVRDAKLCEAIVRAVRDYDSDLVFFGLANSQMIDIARAAGLRVKEEVF
ADRGYNPDGTLVKRGTPGALHEDEDVALNQTLSMVRDKQVRAIDGTWVPIRAETVCLHGDGAHALAFARRIRERLGAEGI
AIRAGN
>Mature_246_residues
MQIDLNADLGEGCGNDEALLALISSANIACGWHAGDAATMLQTVKWALANKVSIGAHPSFPDRENFGRTEMQRDPEAVYA
DVLYQIGALDAMVRAQGGELAHVKPHGALYNMAVRDAKLCEAIVRAVRDYDSDLVFFGLANSQMIDIARAAGLRVKEEVF
ADRGYNPDGTLVKRGTPGALHEDEDVALNQTLSMVRDKQVRAIDGTWVPIRAETVCLHGDGAHALAFARRIRERLGAEGI
AIRAGN

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=244, Percent_Identity=59.4262295081967, Blast_Score=298, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y064_RALME (Q1LSC6)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_582219.1
- ProteinModelPortal:   Q1LSC6
- SMR:   Q1LSC6
- STRING:   Q1LSC6
- GeneID:   4036848
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_0064
- eggNOG:   COG1540
- HOGENOM:   HBG482818
- OMA:   QTICLHG
- PhylomeDB:   Q1LSC6
- ProtClustDB:   PRK05406
- BioCyc:   RMET266264:RMET_0064-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 26563; Mature: 26563

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDLNADLGEGCGNDEALLALISSANIACGWHAGDAATMLQTVKWALANKVSIGAHPSF
CEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCC
PDRENFGRTEMQRDPEAVYADVLYQIGALDAMVRAQGGELAHVKPHGALYNMAVRDAKLC
CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
EAIVRAVRDYDSDLVFFGLANSQMIDIARAAGLRVKEEVFADRGYNPDGTLVKRGTPGAL
HHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC
HEDEDVALNQTLSMVRDKQVRAIDGTWVPIRAETVCLHGDGAHALAFARRIRERLGAEGI
CCCCCHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCE
AIRAGN
EEEECC
>Mature Secondary Structure
MQIDLNADLGEGCGNDEALLALISSANIACGWHAGDAATMLQTVKWALANKVSIGAHPSF
CEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCC
PDRENFGRTEMQRDPEAVYADVLYQIGALDAMVRAQGGELAHVKPHGALYNMAVRDAKLC
CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
EAIVRAVRDYDSDLVFFGLANSQMIDIARAAGLRVKEEVFADRGYNPDGTLVKRGTPGAL
HHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC
HEDEDVALNQTLSMVRDKQVRAIDGTWVPIRAETVCLHGDGAHALAFARRIRERLGAEGI
CCCCCHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCE
AIRAGN
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA