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The map label for this gene is lpsJ [H]

Identifier: 93006417

GI number: 93006417

Start: 1951561

End: 1952190

Strand: Reverse

Name: lpsJ [H]

Synonym: Pcryo_1593

Alternate gene names: 93006417

Gene position: 1952190-1951561 (Counterclockwise)

Preceding gene: 93006418

Following gene: 93006416

Centisome position: 63.8

GC content: 46.03

Gene sequence:

>630_bases
ATGGCATGGACAAGAGAGCAGATGGCACAGCGTGCCGCACAAGAGTTACAAGACGGTTATTATGTTAACTTAGGCATCGG
TCTACCGACACTCGTTGCAAACTATATCCCTAAAGACGTCGATGTCTGGCTACAGTCAGAAAACGGCTTATTAGGTATTG
GCGAGTTTCCTACTGCAGAAAACGTCGATGCAGATTTGATTAATGCAGGTAAACAAACGGTCACTGCCGAATCAGGTGCG
AGTTATTTTAGTAGTTCAGAGTCGTTTGCGATGATTCGTGGCGGTCATGTTAACCTTGCAATATTGGGCGCGATGGAAGT
CTCAGAGCAGGGCGATTTGGCAAACTGGATGATTCCCAAAAAAATGGTTAAAGGCATGGGCGGCGCGATGGATTTGGTCG
CAGGCGTACAGCGTGTGATTGTGCTCATGGAGCAAGTTAATAAACACGGCGAGCCAAAAATCCTTGCCAATTGCGAATTA
CCACTGACAGGGAAAGGCGTTGTTGATCGTATTATCACAGAGCTTGCGGTACTTGATGTGACTGATAATGGTCTAAAACT
GGTTGAGTTAGCAGATGGTGTTAGCTTCGATGAGCTACAAGAAAAAACACCAGTGAGCATTGCTCAATAG

Upstream 100 bases:

>100_bases
ACTAAAGTGGTCGAAGGCGCTTAGTCATTGCGATTACAGCATAATTAATAAATTATTAAATTTATAGTAATAGAATATCG
TAAAAATTAAGGAAGCTATC

Downstream 100 bases:

>100_bases
CTTTGATAAACCACTTAATAGTTCAAATACTGATTAGTAAATTTTTTAATAGCCACTATATTTTAGTGGCTTATTTATAG
GCTTCATTCATCACTACACA

Product: 3-oxoacid CoA-transferase subunit B

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MAWTREQMAQRAAQELQDGYYVNLGIGLPTLVANYIPKDVDVWLQSENGLLGIGEFPTAENVDADLINAGKQTVTAESGA
SYFSSSESFAMIRGGHVNLAILGAMEVSEQGDLANWMIPKKMVKGMGGAMDLVAGVQRVIVLMEQVNKHGEPKILANCEL
PLTGKGVVDRIITELAVLDVTDNGLKLVELADGVSFDELQEKTPVSIAQ

Sequences:

>Translated_209_residues
MAWTREQMAQRAAQELQDGYYVNLGIGLPTLVANYIPKDVDVWLQSENGLLGIGEFPTAENVDADLINAGKQTVTAESGA
SYFSSSESFAMIRGGHVNLAILGAMEVSEQGDLANWMIPKKMVKGMGGAMDLVAGVQRVIVLMEQVNKHGEPKILANCEL
PLTGKGVVDRIITELAVLDVTDNGLKLVELADGVSFDELQEKTPVSIAQ
>Mature_208_residues
AWTREQMAQRAAQELQDGYYVNLGIGLPTLVANYIPKDVDVWLQSENGLLGIGEFPTAENVDADLINAGKQTVTAESGAS
YFSSSESFAMIRGGHVNLAILGAMEVSEQGDLANWMIPKKMVKGMGGAMDLVAGVQRVIVLMEQVNKHGEPKILANCELP
LTGKGVVDRIITELAVLDVTDNGLKLVELADGVSFDELQEKTPVSIAQ

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=206, Percent_Identity=58.7378640776699, Blast_Score=240, Evalue=6e-64,
Organism=Homo sapiens, GI11545841, Length=206, Percent_Identity=56.3106796116505, Blast_Score=234, Evalue=5e-62,
Organism=Escherichia coli, GI1788552, Length=199, Percent_Identity=50.251256281407, Blast_Score=206, Evalue=7e-55,
Organism=Caenorhabditis elegans, GI17531517, Length=202, Percent_Identity=59.4059405940594, Blast_Score=243, Evalue=6e-65,
Organism=Drosophila melanogaster, GI21358325, Length=201, Percent_Identity=61.6915422885572, Blast_Score=250, Evalue=5e-67,
Organism=Drosophila melanogaster, GI24655794, Length=201, Percent_Identity=61.6915422885572, Blast_Score=249, Evalue=9e-67,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22446; Mature: 22315

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS01274 COA_TRANSF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWTREQMAQRAAQELQDGYYVNLGIGLPTLVANYIPKDVDVWLQSENGLLGIGEFPTAE
CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCC
NVDADLINAGKQTVTAESGASYFSSSESFAMIRGGHVNLAILGAMEVSEQGDLANWMIPK
CCCHHHHHCCCCEEECCCCCHHHCCCCCEEEEECCCEEEEEEEEEECCCCCCCHHHCCHH
KMVKGMGGAMDLVAGVQRVIVLMEQVNKHGEPKILANCELPLTGKGVVDRIITELAVLDV
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHEEEE
TDNGLKLVELADGVSFDELQEKTPVSIAQ
CCCCEEEEEECCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
AWTREQMAQRAAQELQDGYYVNLGIGLPTLVANYIPKDVDVWLQSENGLLGIGEFPTAE
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCC
NVDADLINAGKQTVTAESGASYFSSSESFAMIRGGHVNLAILGAMEVSEQGDLANWMIPK
CCCHHHHHCCCCEEECCCCCHHHCCCCCEEEEECCCEEEEEEEEEECCCCCCCHHHCCHH
KMVKGMGGAMDLVAGVQRVIVLMEQVNKHGEPKILANCELPLTGKGVVDRIITELAVLDV
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHEEEE
TDNGLKLVELADGVSFDELQEKTPVSIAQ
CCCCEEEEEECCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]