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The map label for this gene is ybhD [H]

Identifier: 93006380

GI number: 93006380

Start: 1909531

End: 1910460

Strand: Direct

Name: ybhD [H]

Synonym: Pcryo_1556

Alternate gene names: 93006380

Gene position: 1909531-1910460 (Clockwise)

Preceding gene: 93006375

Following gene: 93006381

Centisome position: 62.41

GC content: 46.56

Gene sequence:

>930_bases
ATGAATATCAGCATTCGCCAACTTACCGCTTTTATCAAAGTCGCTGACAACGGCAGCTTTACTCGTGCCAGCGACCAGAT
GCATTTGACCCAATCTGCGGTCAGTGGATTGATAAAAGAGCTTGAATCTAGCCTTGGCATTGTGTTGTTTGATCGCACTA
CACGCCAGCTGTCGTTGTCGGCAGTTGGACGGCATCTATTGCCGCAAGCTCGGCGCATCTTAAATGAGATGCAGCTGTTT
GAAAATGAAGCCAGTAGCTTAACGAGCTTAGCGCAAGGTCAGGTCAGGCTCGCTGTATCACAGTTTGCGGCCTCCTCTAT
GCCAGCGGTTATCGCTCAGTTTGCCAAAGAATATCCTGAGATTAGCGTGTCTTTGCTCGATTGCTCAGCAGAAAATGTCT
TAGAACACATTCAAAACATTGAGGTGGATTTGGGCGTGGGCACTGAGCTTGAATTTATGGACGCTGAAGATGACATCAGC
GCCGATTTGTTATATCAGCTGCCATTCTGTGTGGTCATGCCTGATAGTCATGCTCTGGCACGTAAATCTGAGATTGTTTG
GCAAGATTTGATTGATACGCCGCTCATTACCCTGCAAGGTCCATTTATTGAGCAAGTGACCGCAGAGCTTGATGAGCGTA
TCGCAAACCACATACAACAAGCACGCTATAAAGTAAATTTTATGTCGACAGCGCTCGAGATGACCCGTCAAGGCTTTGGT
ATTACCTTGTGTCTGCCTTATATGCCTGAGGTGATAGACTGGGTCAGCGCTAATGGTTTGCAGATGCGACCTTTGACGCA
ACCTGTCAAAATGCGCCGATTCTTTATTTACCAACGTTCATCGCGAGCTTTATCGCCGGCGAGTATCGCTTTTAAGCATT
TTTTGCAGGGCTACTTTGCGACCCATTTTGATGATTTGCAAAATATTTAA

Upstream 100 bases:

>100_bases
ATAAGTTTCATCAATCATTCCTATTGACGATTCATTTATATTAGATTAGCTTGATTTATAAGACTAATCGTATTTTTTGA
TTTATTTATCAGGTTTACTT

Downstream 100 bases:

>100_bases
CAGCCAGCTTTCTACCCTTTATCAAAACAAGTCAGACGATGATTCAAGAAAATGGCATCACTAGGCAAAAAAATGCATGA
ATTGGTGGGGATAATGGAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNISIRQLTAFIKVADNGSFTRASDQMHLTQSAVSGLIKELESSLGIVLFDRTTRQLSLSAVGRHLLPQARRILNEMQLF
ENEASSLTSLAQGQVRLAVSQFAASSMPAVIAQFAKEYPEISVSLLDCSAENVLEHIQNIEVDLGVGTELEFMDAEDDIS
ADLLYQLPFCVVMPDSHALARKSEIVWQDLIDTPLITLQGPFIEQVTAELDERIANHIQQARYKVNFMSTALEMTRQGFG
ITLCLPYMPEVIDWVSANGLQMRPLTQPVKMRRFFIYQRSSRALSPASIAFKHFLQGYFATHFDDLQNI

Sequences:

>Translated_309_residues
MNISIRQLTAFIKVADNGSFTRASDQMHLTQSAVSGLIKELESSLGIVLFDRTTRQLSLSAVGRHLLPQARRILNEMQLF
ENEASSLTSLAQGQVRLAVSQFAASSMPAVIAQFAKEYPEISVSLLDCSAENVLEHIQNIEVDLGVGTELEFMDAEDDIS
ADLLYQLPFCVVMPDSHALARKSEIVWQDLIDTPLITLQGPFIEQVTAELDERIANHIQQARYKVNFMSTALEMTRQGFG
ITLCLPYMPEVIDWVSANGLQMRPLTQPVKMRRFFIYQRSSRALSPASIAFKHFLQGYFATHFDDLQNI
>Mature_309_residues
MNISIRQLTAFIKVADNGSFTRASDQMHLTQSAVSGLIKELESSLGIVLFDRTTRQLSLSAVGRHLLPQARRILNEMQLF
ENEASSLTSLAQGQVRLAVSQFAASSMPAVIAQFAKEYPEISVSLLDCSAENVLEHIQNIEVDLGVGTELEFMDAEDDIS
ADLLYQLPFCVVMPDSHALARKSEIVWQDLIDTPLITLQGPFIEQVTAELDERIANHIQQARYKVNFMSTALEMTRQGFG
ITLCLPYMPEVIDWVSANGLQMRPLTQPVKMRRFFIYQRSSRALSPASIAFKHFLQGYFATHFDDLQNI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=318, Percent_Identity=28.6163522012579, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788748, Length=301, Percent_Identity=30.8970099667774, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI157672245, Length=293, Percent_Identity=28.6689419795222, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788481, Length=150, Percent_Identity=34.6666666666667, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=150, Percent_Identity=34, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790399, Length=307, Percent_Identity=22.1498371335505, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787128, Length=223, Percent_Identity=28.2511210762332, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=23.3676975945017, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788296, Length=181, Percent_Identity=29.2817679558011, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367136, Length=291, Percent_Identity=24.0549828178694, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786508, Length=151, Percent_Identity=25.8278145695364, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788887, Length=263, Percent_Identity=25.4752851711027, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=30.8943089430894, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786713, Length=250, Percent_Identity=28.4, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787589, Length=200, Percent_Identity=28.5, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87081904, Length=197, Percent_Identity=25.8883248730964, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787530, Length=212, Percent_Identity=23.5849056603774, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789204, Length=264, Percent_Identity=25.3787878787879, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082132, Length=145, Percent_Identity=28.9655172413793, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=177, Percent_Identity=27.683615819209, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787949, Length=135, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=190, Percent_Identity=27.3684210526316, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=282, Percent_Identity=25.177304964539, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788297, Length=147, Percent_Identity=30.6122448979592, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34674; Mature: 34674

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISIRQLTAFIKVADNGSFTRASDQMHLTQSAVSGLIKELESSLGIVLFDRTTRQLSLS
CCCHHHHHHHHHEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHH
AVGRHLLPQARRILNEMQLFENEASSLTSLAQGQVRLAVSQFAASSMPAVIAQFAKEYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
ISVSLLDCSAENVLEHIQNIEVDLGVGTELEFMDAEDDISADLLYQLPFCVVMPDSHALA
CEEEEECCCHHHHHHHHHCCEEEECCCCCEEEECCCCCCCHHHHHHCCEEEEECCCHHHH
RKSEIVWQDLIDTPLITLQGPFIEQVTAELDERIANHIQQARYKVNFMSTALEMTRQGFG
HHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ITLCLPYMPEVIDWVSANGLQMRPLTQPVKMRRFFIYQRSSRALSPASIAFKHFLQGYFA
EEEEHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHH
THFDDLQNI
HHHHHHHCC
>Mature Secondary Structure
MNISIRQLTAFIKVADNGSFTRASDQMHLTQSAVSGLIKELESSLGIVLFDRTTRQLSLS
CCCHHHHHHHHHEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHH
AVGRHLLPQARRILNEMQLFENEASSLTSLAQGQVRLAVSQFAASSMPAVIAQFAKEYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
ISVSLLDCSAENVLEHIQNIEVDLGVGTELEFMDAEDDISADLLYQLPFCVVMPDSHALA
CEEEEECCCHHHHHHHHHCCEEEECCCCCEEEECCCCCCCHHHHHHCCEEEEECCCHHHH
RKSEIVWQDLIDTPLITLQGPFIEQVTAELDERIANHIQQARYKVNFMSTALEMTRQGFG
HHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ITLCLPYMPEVIDWVSANGLQMRPLTQPVKMRRFFIYQRSSRALSPASIAFKHFLQGYFA
EEEEHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHH
THFDDLQNI
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]