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The map label for this gene is yciR [C]

Identifier: 93006277

GI number: 93006277

Start: 1786139

End: 1787875

Strand: Direct

Name: yciR [C]

Synonym: Pcryo_1451

Alternate gene names: 93006277

Gene position: 1786139-1787875 (Clockwise)

Preceding gene: 93006276

Following gene: 93006278

Centisome position: 58.37

GC content: 38.51

Gene sequence:

>1737_bases
ATGAGTTCATTTATGACTGCTTTTACACCAATGCCACTGGCGGATAAACAGCAATTATTGGTCAAACTTTGTGAACAATA
TGAAGATGCTATCTTTATATTGGATGCAAATTTGTATTATTTATCGGTCAATGCAACTTATGAGCGCATGATCGGTTATA
CGGAAGATTTTTTACTTGGGCGTCCACTTGGTATATACGCGGCTGAATTTTTATCAGAAGAAGAAAGATCTATTCTAGTA
GATATTGCTGAACACTTAGACAGTCAAGGTTTTTATGAAAACGACTTTTCAATGCCAAATCGCTACGGAGATCTTCTAGA
TTGTTATATGACCTATCGAAAAATAAAAATAGGTCATACTATTTATTACGTTGGTATGGTTAGAGATATGTCTGCCGTGG
TAAAAAATAAAAAACAAGTAGCACACTTGTTAAACTACGACCAATTAACTGAACTGCCTAACCGCAAAGTATTTTTGAGC
CAAACTAGCGACTTGTTACTGGATAGCTATCAAGAAGTTATCATTGTACGTTTAAATATTGATCGCTATCGCAGCCTTGC
AAGCTTACTGGGTCCCGATGGTATCAATAGCTTAATAAAAAAATTTGTGACACGCATCAAAGACCTAAAACTCGGTTGTT
TGCGCTGTTTCTCTCATTTTGGCGGTGATGATTTTGCTTTACTGTTTGAGTGTAGTGATGCCAATATGGTGCGCCATCAA
CTAGATATTTTAATGCAAATGTGTGAGCGTCCTTTCTTTATTAGTGATAATGGAGCCACAAATACCGAGGTGTATTGTCA
TGTCTCTGTCGGGGTCAGTTACTATCCTGAAAATGATAATGAGTTTATCGGCTTATTAACCAAAGCTGAAAGAGCATTAA
ATTATGTCAAGCAGCAAGGTGGCGACGATGTCTTTTGGTATAACAACTCCCTTCTTGAGCTCAATGCTGATCATTTACAA
TTAGAATATGAGCTTAAAAAAGCCACTAACGAAGGTCAGTTTATCGCCTATTATCAACCCAAATTCGCCCTAGATACAGG
TGATATTTCAGGCTTTGAAGCTTTGGTACGCTGGCAGCATCCCATTCGCGGATTGCTGCAACCTATTGATTTTATTGATG
CCATTCTCTCTCACAAATTATCGCTTGAGTTGTTCTCTCAAGTTGCAACCCAAATCGCTGAACAATTAACCATTTGGCAA
AAACTTGGCTTTGACCAACATATCTGTATCAATGCCGATGCCGCTGAATTCAGCAATCCAGAATTTTTTGATGTGGTCAG
TAATTTACTGGCACAGCATCAAATTGCCGCGCACCAATTACATATTGAGGTGACAGAATCTTCTTTGATGAAGCGCCACT
CTAATGTTAAAGAACAGCTAAATTCGTTAAAAGCGCTAGGGGTTTGCTTGGCTTTAGATGACTTTGGTACCGGCTATGCT
TCTTTGAGTTATCTGCAAGAATATCCCTTTGACTTCATTAAAATCGATAAAAGTTTCATCTCTAAAATTACCGCAGACAA
AACTCAACGTGCCATTGTTAACGCTATTTTGGCATTAGCAGAAGCACTGGATATGCAGGTCATCGCAGAAGGTATCGAAA
ATGAGCAACAGCGCGATTTGCTCTTGGCTATGGGTTGCCAGTATGGTCAAGGCTATTGGTTTGGCAAACCTATGTCTGCT
GAAGTTACAACCAACATGTTAATGCAACAACATTTGTCTAAAAATAGCAATGATTAG

Upstream 100 bases:

>100_bases
TGTCCTAGTAGCACTGTATCTTTTTAAACTGCACTAATTACATTAAAACAGCGCTAATTGCCAATACGAAAAGCTCTCTT
TATCGATTTACCTCTAATTT

Downstream 100 bases:

>100_bases
AGAGCGAGTATAAAACACCCTCATATCGTTCCTCTACCATATCGATAAACGCGCTTAGCGTGTAGGCTATATTGTACATA
GGATGCAAGATAGGTTGATG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 578; Mature: 577

Protein sequence:

>578_residues
MSSFMTAFTPMPLADKQQLLVKLCEQYEDAIFILDANLYYLSVNATYERMIGYTEDFLLGRPLGIYAAEFLSEEERSILV
DIAEHLDSQGFYENDFSMPNRYGDLLDCYMTYRKIKIGHTIYYVGMVRDMSAVVKNKKQVAHLLNYDQLTELPNRKVFLS
QTSDLLLDSYQEVIIVRLNIDRYRSLASLLGPDGINSLIKKFVTRIKDLKLGCLRCFSHFGGDDFALLFECSDANMVRHQ
LDILMQMCERPFFISDNGATNTEVYCHVSVGVSYYPENDNEFIGLLTKAERALNYVKQQGGDDVFWYNNSLLELNADHLQ
LEYELKKATNEGQFIAYYQPKFALDTGDISGFEALVRWQHPIRGLLQPIDFIDAILSHKLSLELFSQVATQIAEQLTIWQ
KLGFDQHICINADAAEFSNPEFFDVVSNLLAQHQIAAHQLHIEVTESSLMKRHSNVKEQLNSLKALGVCLALDDFGTGYA
SLSYLQEYPFDFIKIDKSFISKITADKTQRAIVNAILALAEALDMQVIAEGIENEQQRDLLLAMGCQYGQGYWFGKPMSA
EVTTNMLMQQHLSKNSND

Sequences:

>Translated_578_residues
MSSFMTAFTPMPLADKQQLLVKLCEQYEDAIFILDANLYYLSVNATYERMIGYTEDFLLGRPLGIYAAEFLSEEERSILV
DIAEHLDSQGFYENDFSMPNRYGDLLDCYMTYRKIKIGHTIYYVGMVRDMSAVVKNKKQVAHLLNYDQLTELPNRKVFLS
QTSDLLLDSYQEVIIVRLNIDRYRSLASLLGPDGINSLIKKFVTRIKDLKLGCLRCFSHFGGDDFALLFECSDANMVRHQ
LDILMQMCERPFFISDNGATNTEVYCHVSVGVSYYPENDNEFIGLLTKAERALNYVKQQGGDDVFWYNNSLLELNADHLQ
LEYELKKATNEGQFIAYYQPKFALDTGDISGFEALVRWQHPIRGLLQPIDFIDAILSHKLSLELFSQVATQIAEQLTIWQ
KLGFDQHICINADAAEFSNPEFFDVVSNLLAQHQIAAHQLHIEVTESSLMKRHSNVKEQLNSLKALGVCLALDDFGTGYA
SLSYLQEYPFDFIKIDKSFISKITADKTQRAIVNAILALAEALDMQVIAEGIENEQQRDLLLAMGCQYGQGYWFGKPMSA
EVTTNMLMQQHLSKNSND
>Mature_577_residues
SSFMTAFTPMPLADKQQLLVKLCEQYEDAIFILDANLYYLSVNATYERMIGYTEDFLLGRPLGIYAAEFLSEEERSILVD
IAEHLDSQGFYENDFSMPNRYGDLLDCYMTYRKIKIGHTIYYVGMVRDMSAVVKNKKQVAHLLNYDQLTELPNRKVFLSQ
TSDLLLDSYQEVIIVRLNIDRYRSLASLLGPDGINSLIKKFVTRIKDLKLGCLRCFSHFGGDDFALLFECSDANMVRHQL
DILMQMCERPFFISDNGATNTEVYCHVSVGVSYYPENDNEFIGLLTKAERALNYVKQQGGDDVFWYNNSLLELNADHLQL
EYELKKATNEGQFIAYYQPKFALDTGDISGFEALVRWQHPIRGLLQPIDFIDAILSHKLSLELFSQVATQIAEQLTIWQK
LGFDQHICINADAAEFSNPEFFDVVSNLLAQHQIAAHQLHIEVTESSLMKRHSNVKEQLNSLKALGVCLALDDFGTGYAS
LSYLQEYPFDFIKIDKSFISKITADKTQRAIVNAILALAEALDMQVIAEGIENEQQRDLLLAMGCQYGQGYWFGKPMSAE
VTTNMLMQQHLSKNSND

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=452, Percent_Identity=28.7610619469027, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI87081921, Length=428, Percent_Identity=28.2710280373832, Blast_Score=196, Evalue=4e-51,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=35.5932203389831, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=34.4262295081967, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=27.5294117647059, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=30.4526748971193, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1790496, Length=257, Percent_Identity=28.4046692607004, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=30.1255230125523, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=30.2040816326531, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=33.8775510204082, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=29.3172690763052, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=28.099173553719, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=30.718954248366, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 65910; Mature: 65779

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFMTAFTPMPLADKQQLLVKLCEQYEDAIFILDANLYYLSVNATYERMIGYTEDFLLG
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHCCCCHHHHCC
RPLGIYAAEFLSEEERSILVDIAEHLDSQGFYENDFSMPNRYGDLLDCYMTYRKIKIGHT
CCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCE
IYYVGMVRDMSAVVKNKKQVAHLLNYDQLTELPNRKVFLSQTSDLLLDSYQEVIIVRLNI
EEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEEECCHHHHHHHCCCEEEEEEECH
DRYRSLASLLGPDGINSLIKKFVTRIKDLKLGCLRCFSHFGGDDFALLFECSDANMVRHQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
LDILMQMCERPFFISDNGATNTEVYCHVSVGVSYYPENDNEFIGLLTKAERALNYVKQQG
HHHHHHHHCCCEEEECCCCCCCEEEEEEEECEEECCCCCCCEEHHHHHHHHHHHHHHHCC
GDDVFWYNNSLLELNADHLQLEYELKKATNEGQFIAYYQPKFALDTGDISGFEALVRWQH
CCEEEEECCCEEEECCCCEEEEEEEHHCCCCCCEEEEECCCEEECCCCCCHHHHHHHHHH
PIRGLLQPIDFIDAILSHKLSLELFSQVATQIAEQLTIWQKLGFDQHICINADAAEFSNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCC
EFFDVVSNLLAQHQIAAHQLHIEVTESSLMKRHSNVKEQLNSLKALGVCLALDDFGTGYA
HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHH
SLSYLQEYPFDFIKIDKSFISKITADKTQRAIVNAILALAEALDMQVIAEGIENEQQRDL
HHHHHHHCCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LLAMGCQYGQGYWFGKPMSAEVTTNMLMQQHLSKNSND
HHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSFMTAFTPMPLADKQQLLVKLCEQYEDAIFILDANLYYLSVNATYERMIGYTEDFLLG
CCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHCCCCHHHHCC
RPLGIYAAEFLSEEERSILVDIAEHLDSQGFYENDFSMPNRYGDLLDCYMTYRKIKIGHT
CCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCE
IYYVGMVRDMSAVVKNKKQVAHLLNYDQLTELPNRKVFLSQTSDLLLDSYQEVIIVRLNI
EEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEEECCHHHHHHHCCCEEEEEEECH
DRYRSLASLLGPDGINSLIKKFVTRIKDLKLGCLRCFSHFGGDDFALLFECSDANMVRHQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
LDILMQMCERPFFISDNGATNTEVYCHVSVGVSYYPENDNEFIGLLTKAERALNYVKQQG
HHHHHHHHCCCEEEECCCCCCCEEEEEEEECEEECCCCCCCEEHHHHHHHHHHHHHHHCC
GDDVFWYNNSLLELNADHLQLEYELKKATNEGQFIAYYQPKFALDTGDISGFEALVRWQH
CCEEEEECCCEEEECCCCEEEEEEEHHCCCCCCEEEEECCCEEECCCCCCHHHHHHHHHH
PIRGLLQPIDFIDAILSHKLSLELFSQVATQIAEQLTIWQKLGFDQHICINADAAEFSNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCC
EFFDVVSNLLAQHQIAAHQLHIEVTESSLMKRHSNVKEQLNSLKALGVCLALDDFGTGYA
HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHH
SLSYLQEYPFDFIKIDKSFISKITADKTQRAIVNAILALAEALDMQVIAEGIENEQQRDL
HHHHHHHCCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LLAMGCQYGQGYWFGKPMSAEVTTNMLMQQHLSKNSND
HHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]