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The map label for this gene is bkdR [H]

Identifier: 93005989

GI number: 93005989

Start: 1407357

End: 1407845

Strand: Reverse

Name: bkdR [H]

Synonym: Pcryo_1161

Alternate gene names: 93005989

Gene position: 1407845-1407357 (Counterclockwise)

Preceding gene: 93005992

Following gene: 93005983

Centisome position: 46.01

GC content: 46.01

Gene sequence:

>489_bases
ATGCAACATGCTCATTCTAATCAGCTGTTAATTGCAGATATTGATGACACAGATAAACGCTTATTGCGCTTATTACAGAC
CGATGCACGTATGAGCATTACTGAGCTTGCTGAGCGCGTTAATCTCTCGGCAACCCCTTGTGCGCGCCGTATTAAGCGCT
TAGAAGATAGTGACGTTATCACCGGTTATCATACTCAAACCGATGCCCAAAAACTTGGCTATCCCTTGGCAGTTTTCATT
GCTATCAGTATGGACCGTCACACGGCCGACCGTTTTGAGCAGTTTGAGCGCAAGGTTAAAAGCTTCGATGAAGTCATCAG
CTGTAGTATCGTCACTGGTCGCTCCGAGGACTACCTGATTAAAGTACGCGTACGGGATATGGCTCACTATGAGGAATTTT
TATTGCATCGGTTAAATCGTATCGAAGGCGTGGCACAAGTCCATACCAGCTTTGAGCTGCGAGAAGTATTCAGCCGCAGT
ATGGTTTAA

Upstream 100 bases:

>100_bases
GTGAATATCGGCTTTATAATAAGTATATTTACCTTATATTAGTGAAATACGATAAATAAATCGCTATAATTGGCATAATC
CACTAATAAAAATACTTATT

Downstream 100 bases:

>100_bases
TCATACTAAAGTGATTCGCTTACATGATTATTTTTTGCAGTCGGTTCGTTTGACGCCAGAAAAAGAATACCAAAACCAGT
CCTATCAGCAGTCCTATAGC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MQHAHSNQLLIADIDDTDKRLLRLLQTDARMSITELAERVNLSATPCARRIKRLEDSDVITGYHTQTDAQKLGYPLAVFI
AISMDRHTADRFEQFERKVKSFDEVISCSIVTGRSEDYLIKVRVRDMAHYEEFLLHRLNRIEGVAQVHTSFELREVFSRS
MV

Sequences:

>Translated_162_residues
MQHAHSNQLLIADIDDTDKRLLRLLQTDARMSITELAERVNLSATPCARRIKRLEDSDVITGYHTQTDAQKLGYPLAVFI
AISMDRHTADRFEQFERKVKSFDEVISCSIVTGRSEDYLIKVRVRDMAHYEEFLLHRLNRIEGVAQVHTSFELREVFSRS
MV
>Mature_162_residues
MQHAHSNQLLIADIDDTDKRLLRLLQTDARMSITELAERVNLSATPCARRIKRLEDSDVITGYHTQTDAQKLGYPLAVFI
AISMDRHTADRFEQFERKVKSFDEVISCSIVTGRSEDYLIKVRVRDMAHYEEFLLHRLNRIEGVAQVHTSFELREVFSRS
MV

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=144, Percent_Identity=40.2777777777778, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI87081742, Length=143, Percent_Identity=36.3636363636364, Blast_Score=105, Evalue=1e-24,
Organism=Escherichia coli, GI1790182, Length=148, Percent_Identity=25.6756756756757, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 18809; Mature: 18809

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHAHSNQLLIADIDDTDKRLLRLLQTDARMSITELAERVNLSATPCARRIKRLEDSDVI
CCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCE
TGYHTQTDAQKLGYPLAVFIAISMDRHTADRFEQFERKVKSFDEVISCSIVTGRSEDYLI
ECCCCCCCHHHHCCCEEHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEE
KVRVRDMAHYEEFLLHRLNRIEGVAQVHTSFELREVFSRSMV
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQHAHSNQLLIADIDDTDKRLLRLLQTDARMSITELAERVNLSATPCARRIKRLEDSDVI
CCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCE
TGYHTQTDAQKLGYPLAVFIAISMDRHTADRFEQFERKVKSFDEVISCSIVTGRSEDYLI
ECCCCCCCHHHHCCCEEHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEE
KVRVRDMAHYEEFLLHRLNRIEGVAQVHTSFELREVFSRSMV
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]