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The map label for this gene is ycfD [C]

Identifier: 93005972

GI number: 93005972

Start: 1386318

End: 1387490

Strand: Reverse

Name: ycfD [C]

Synonym: Pcryo_1144

Alternate gene names: 93005972

Gene position: 1387490-1386318 (Counterclockwise)

Preceding gene: 93005974

Following gene: 93005964

Centisome position: 45.34

GC content: 44.76

Gene sequence:

>1173_bases
ATGACTTCTATCTCCCTTTGTTTACCGAATACCATTACTCCTGAGCAATTCTTAAGCGATTATTGGCAAAAAAAACCCCT
CTTGATTAAGCAAGGCTTACCGCAATTAATTGGTATGTTTGAGCCGGAAGATATCTTAGGCTTAGCTATAGATGAAGACG
CTACTGCAAGGCTACTGACTCAAGCTGCGAGCAAACAAGAAGGTCAGCCGCAATGGCAACTTAAAAAGAACCCACTAACT
GAAGCCGACTTTGATAACTTACCTGAGCAATGGTCAGTACTGGTACAAAATCTTGAGCAATGGTCGCCGGAACTTGGCGC
ATTATGGCAGGCGCTTGATTTTATACCGCAGTGGCAGCGCGATGATATTATGGTGTCTTATGCGCCAAAAGGCGGCTCGG
TTGGCAAGCATTATGATGATTACGATGTATTTCTAGCGCAAGGGTTTGGCTCTAGGCGTTGGCAGTTAGGTAAGTTTTGT
GATGAGCAGACGCAATTTGTTGCCGATGAGCCGATACGTCTATTTGATGATATGGGCGAGATTATCTTTGATGAAATCTT
AGAAGCCGGTGATGTGCTATACGTGCCACCAAAATTAGCACATTTTGGCGTAGCGCAAGATGATTGCCTAACCTTTTCCT
TTGGCTGCCGTCGTCCAAACTTGATGCAAATCATTGACAACCTTGCCGATGTCGCGACCAATGACAGCGCTTTATTTATA
CCGATGTTATTACCACAAGCTATGCAAGCGTCAGGGGAGTTAAAGACTGACAGCATTGAGGCGATTAAAACTCAATTATT
ACAACTCCTCCAATCTGAGCGCGGTGATACGATTATTCGCCAAGCCGTGTCTGAAGTGGTCAGCAAGCGTCAATATGATG
TGCTTGTCCCTGAAGAGTCGCTGACGACTGATGAGATGATAGCAGCATTGGCAACTGGCGCGACGTTGGAAGCAGATTAC
AGCAATCGTTTGTTATACACTCAGGCGGATAATGACATCGTTTTATATGCCAATGGGCAACGCCTAGATGATTTGCATGA
AACATCGATAGCACTACTGGTACGCTTATCTAATGGCGAGCATTTAAGCCTTGACGATATGGAAGGGATTGACCCTGATG
AAGTGATGGAATGGTTAGAGAATGGTTGGATATGGATGAATCATCCAGAGTAA

Upstream 100 bases:

>100_bases
GACAGTCATCAGATAAGCAATAATCATAAACTAATAAATCCTGCCTATAAAGCCATCATTTCTATTAATCTTATAACCAG
TTAACCATACGGATTTATCC

Downstream 100 bases:

>100_bases
TGCCATAGTTATTAGCCAGTTTTTATAGCACATTGGCTATTAAGCATTATTTAAAAACCATCAGCGCCTATTTACTAAGA
TTTAAATGTCTTAATAAATA

Product: cupin 4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTSISLCLPNTITPEQFLSDYWQKKPLLIKQGLPQLIGMFEPEDILGLAIDEDATARLLTQAASKQEGQPQWQLKKNPLT
EADFDNLPEQWSVLVQNLEQWSPELGALWQALDFIPQWQRDDIMVSYAPKGGSVGKHYDDYDVFLAQGFGSRRWQLGKFC
DEQTQFVADEPIRLFDDMGEIIFDEILEAGDVLYVPPKLAHFGVAQDDCLTFSFGCRRPNLMQIIDNLADVATNDSALFI
PMLLPQAMQASGELKTDSIEAIKTQLLQLLQSERGDTIIRQAVSEVVSKRQYDVLVPEESLTTDEMIAALATGATLEADY
SNRLLYTQADNDIVLYANGQRLDDLHETSIALLVRLSNGEHLSLDDMEGIDPDEVMEWLENGWIWMNHPE

Sequences:

>Translated_390_residues
MTSISLCLPNTITPEQFLSDYWQKKPLLIKQGLPQLIGMFEPEDILGLAIDEDATARLLTQAASKQEGQPQWQLKKNPLT
EADFDNLPEQWSVLVQNLEQWSPELGALWQALDFIPQWQRDDIMVSYAPKGGSVGKHYDDYDVFLAQGFGSRRWQLGKFC
DEQTQFVADEPIRLFDDMGEIIFDEILEAGDVLYVPPKLAHFGVAQDDCLTFSFGCRRPNLMQIIDNLADVATNDSALFI
PMLLPQAMQASGELKTDSIEAIKTQLLQLLQSERGDTIIRQAVSEVVSKRQYDVLVPEESLTTDEMIAALATGATLEADY
SNRLLYTQADNDIVLYANGQRLDDLHETSIALLVRLSNGEHLSLDDMEGIDPDEVMEWLENGWIWMNHPE
>Mature_389_residues
TSISLCLPNTITPEQFLSDYWQKKPLLIKQGLPQLIGMFEPEDILGLAIDEDATARLLTQAASKQEGQPQWQLKKNPLTE
ADFDNLPEQWSVLVQNLEQWSPELGALWQALDFIPQWQRDDIMVSYAPKGGSVGKHYDDYDVFLAQGFGSRRWQLGKFCD
EQTQFVADEPIRLFDDMGEIIFDEILEAGDVLYVPPKLAHFGVAQDDCLTFSFGCRRPNLMQIIDNLADVATNDSALFIP
MLLPQAMQASGELKTDSIEAIKTQLLQLLQSERGDTIIRQAVSEVVSKRQYDVLVPEESLTTDEMIAALATGATLEADYS
NRLLYTQADNDIVLYANGQRLDDLHETSIALLVRLSNGEHLSLDDMEGIDPDEVMEWLENGWIWMNHPE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=344, Percent_Identity=32.2674418604651, Blast_Score=172, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 44041; Mature: 43910

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSISLCLPNTITPEQFLSDYWQKKPLLIKQGLPQLIGMFEPEDILGLAIDEDATARLLT
CCCEEEECCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCCCCHHEEEEECCCHHHHHHH
QAASKQEGQPQWQLKKNPLTEADFDNLPEQWSVLVQNLEQWSPELGALWQALDFIPQWQR
HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
DDIMVSYAPKGGSVGKHYDDYDVFLAQGFGSRRWQLGKFCDEQTQFVADEPIRLFDDMGE
CCEEEEECCCCCCCCCCCCCHHHHEECCCCCCCCHHHHHHCHHHHHHHCCCHHHHHHHHH
IIFDEILEAGDVLYVPPKLAHFGVAQDDCLTFSFGCRRPNLMQIIDNLADVATNDSALFI
HHHHHHHHCCCEEEECCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEH
PMLLPQAMQASGELKTDSIEAIKTQLLQLLQSERGDTIIRQAVSEVVSKRQYDVLVPEES
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCC
LTTDEMIAALATGATLEADYSNRLLYTQADNDIVLYANGQRLDDLHETSIALLVRLSNGE
CCHHHHHHHHHCCCEEEECCCCCEEEEECCCCEEEEECCCCCHHHHHCCEEEEEEECCCC
HLSLDDMEGIDPDEVMEWLENGWIWMNHPE
EECCCCCCCCCHHHHHHHHHCCCEEEECCC
>Mature Secondary Structure 
TSISLCLPNTITPEQFLSDYWQKKPLLIKQGLPQLIGMFEPEDILGLAIDEDATARLLT
CCEEEECCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCCCCHHEEEEECCCHHHHHHH
QAASKQEGQPQWQLKKNPLTEADFDNLPEQWSVLVQNLEQWSPELGALWQALDFIPQWQR
HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
DDIMVSYAPKGGSVGKHYDDYDVFLAQGFGSRRWQLGKFCDEQTQFVADEPIRLFDDMGE
CCEEEEECCCCCCCCCCCCCHHHHEECCCCCCCCHHHHHHCHHHHHHHCCCHHHHHHHHH
IIFDEILEAGDVLYVPPKLAHFGVAQDDCLTFSFGCRRPNLMQIIDNLADVATNDSALFI
HHHHHHHHCCCEEEECCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEH
PMLLPQAMQASGELKTDSIEAIKTQLLQLLQSERGDTIIRQAVSEVVSKRQYDVLVPEES
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCC
LTTDEMIAALATGATLEADYSNRLLYTQADNDIVLYANGQRLDDLHETSIALLVRLSNGE
CCHHHHHHHHHCCCEEEECCCCCEEEEECCCCEEEEECCCCCHHHHHCCEEEEEEECCCC
HLSLDDMEGIDPDEVMEWLENGWIWMNHPE
EECCCCCCCCCHHHHHHHHHCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]