Click here to switch to the map view.

The map label for this gene is yfiO [C]

Identifier: 93005954

GI number: 93005954

Start: 1358205

End: 1359284

Strand: Reverse

Name: yfiO [C]

Synonym: Pcryo_1126

Alternate gene names: 93005954

Gene position: 1359284-1358205 (Counterclockwise)

Preceding gene: 93005961

Following gene: 93005953

Centisome position: 44.42

GC content: 45.19

Gene sequence:

>1080_bases
ATGCAAGCTGTTGGCAATACGTTTATCAAACTGTCCTCAATCACTTTACTTGCCCTAAGTGTCAACTTAGTGGGTTGTCA
AACCTTTAAAAACCTCACCGGCGGTAAAGACGTGGATGCAGTGGTCACTGCTGAGAAGTCAGAGCAAGCGTACTATAATG
ACGCGATTGCTCAGATTGATAAAGGTCGCTATACCCAAGCGATCGAAGATTTAACCAACTTGCGCACTTTTTATCCGACT
GGACAATATGCCGAGCAATCTTTGCTCGATATGATGTATGCACAATATGCCAGTGGTAAATATGAAACTGCGGCTGCCAG
TGCTGAGCAGTTCATTCGTCTTTATCCGTCTAACCCGCAAGTGAGCTACGCTTACTATGTGCGCGGCGTTGCCAATATGC
AAGGCTCGTCTGAGGGTTTAAAACTGTTTAAGCTCAACCAAGCGGAGCGCGATACTGCTTACTACCGTATTGCTTTCGCC
AATTTCCAAGAGCTGTTGAACAAATATCCAAACAGTCCTTACGCACCTGATGCCGCTCAGCGCATGACGTTTATTTATAA
TCAGTTTGCCGAAAGTGAGATGAGCGCTGCTAATTGGTATATTGAGCGTGAAGCTTATGTAGCTGCTGTCAATCGTGCCA
AATGGGTCTTTCAATATTATCCACTCAGCGAATCTGTGCCAGATGCGATTGCCGTCCTTGCTTATAGCCATGAAAAATTA
GGTCTAACTGATTTAGCAAACGAGTATAAAACTTTATTGCAAATTAACTATCCGAACATGCTAAGCGCTGATGGACGTGT
CAAGCTCAATACCAAACGTGAGCGTTCTCTAGTGAACAAACTAACTTTTGGACAGCTGAGTCGTTTTGATAAAGACACCA
CAGTTTCGACTGGCAATTATAGCGGTGCGACCAAAACTCAAGTCATTCGCAATGCCACTCAACTGAGATTGCCAAGCGAC
AATGCGGCAAATACAGCAGCGCCAAGCAGCACTTCTCCGCTGCGTCTGACTGATGACAATCGCCGTGTACGCTTAGGGGC
GGTTGAAAATGACAGCATCGATATGACCGATAGCAATTAA

Upstream 100 bases:

>100_bases
TAGACCATTATTGATGCACCAAGCATCGTTTTTTATCATCAATCTACTAAATAGTATGATAGCGTCGCTGCTATTATACG
TCTTGTGTCGGAGAAGAAGT

Downstream 100 bases:

>100_bases
TCGTATTTTGGTATGATTGATTAACAGCGTTTATGCGCTGTAATCAATAACGCTGTCATGGCGTCAGACGTCAACTAAAA
ATAAGGTCAACGATACGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MQAVGNTFIKLSSITLLALSVNLVGCQTFKNLTGGKDVDAVVTAEKSEQAYYNDAIAQIDKGRYTQAIEDLTNLRTFYPT
GQYAEQSLLDMMYAQYASGKYETAAASAEQFIRLYPSNPQVSYAYYVRGVANMQGSSEGLKLFKLNQAERDTAYYRIAFA
NFQELLNKYPNSPYAPDAAQRMTFIYNQFAESEMSAANWYIEREAYVAAVNRAKWVFQYYPLSESVPDAIAVLAYSHEKL
GLTDLANEYKTLLQINYPNMLSADGRVKLNTKRERSLVNKLTFGQLSRFDKDTTVSTGNYSGATKTQVIRNATQLRLPSD
NAANTAAPSSTSPLRLTDDNRRVRLGAVENDSIDMTDSN

Sequences:

>Translated_359_residues
MQAVGNTFIKLSSITLLALSVNLVGCQTFKNLTGGKDVDAVVTAEKSEQAYYNDAIAQIDKGRYTQAIEDLTNLRTFYPT
GQYAEQSLLDMMYAQYASGKYETAAASAEQFIRLYPSNPQVSYAYYVRGVANMQGSSEGLKLFKLNQAERDTAYYRIAFA
NFQELLNKYPNSPYAPDAAQRMTFIYNQFAESEMSAANWYIEREAYVAAVNRAKWVFQYYPLSESVPDAIAVLAYSHEKL
GLTDLANEYKTLLQINYPNMLSADGRVKLNTKRERSLVNKLTFGQLSRFDKDTTVSTGNYSGATKTQVIRNATQLRLPSD
NAANTAAPSSTSPLRLTDDNRRVRLGAVENDSIDMTDSN
>Mature_359_residues
MQAVGNTFIKLSSITLLALSVNLVGCQTFKNLTGGKDVDAVVTAEKSEQAYYNDAIAQIDKGRYTQAIEDLTNLRTFYPT
GQYAEQSLLDMMYAQYASGKYETAAASAEQFIRLYPSNPQVSYAYYVRGVANMQGSSEGLKLFKLNQAERDTAYYRIAFA
NFQELLNKYPNSPYAPDAAQRMTFIYNQFAESEMSAANWYIEREAYVAAVNRAKWVFQYYPLSESVPDAIAVLAYSHEKL
GLTDLANEYKTLLQINYPNMLSADGRVKLNTKRERSLVNKLTFGQLSRFDKDTTVSTGNYSGATKTQVIRNATQLRLPSD
NAANTAAPSSTSPLRLTDDNRRVRLGAVENDSIDMTDSN

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=242, Percent_Identity=31.8181818181818, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40102; Mature: 40102

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAVGNTFIKLSSITLLALSVNLVGCQTFKNLTGGKDVDAVVTAEKSEQAYYNDAIAQID
CCCCCCCEEEEHHEEEEEEEEEEEEHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
KGRYTQAIEDLTNLRTFYPTGQYAEQSLLDMMYAQYASGKYETAAASAEQFIRLYPSNPQ
CCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCC
VSYAYYVRGVANMQGSSEGLKLFKLNQAERDTAYYRIAFANFQELLNKYPNSPYAPDAAQ
EEEEEEEEEHHCCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCHHH
RMTFIYNQFAESEMSAANWYIEREAYVAAVNRAKWVFQYYPLSESVPDAIAVLAYSHEKL
HHHHHHHHHHHHHHHHHHEEEECHHHHHHHHCCEEEEEEECCCCCCCHHHHHEEECCCCC
GLTDLANEYKTLLQINYPNMLSADGRVKLNTKRERSLVNKLTFGQLSRFDKDTTVSTGNY
CHHHHHHHHHHEEEECCCCEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEECCCC
SGATKTQVIRNATQLRLPSDNAANTAAPSSTSPLRLTDDNRRVRLGAVENDSIDMTDSN
CCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCEECCCCC
>Mature Secondary Structure
MQAVGNTFIKLSSITLLALSVNLVGCQTFKNLTGGKDVDAVVTAEKSEQAYYNDAIAQID
CCCCCCCEEEEHHEEEEEEEEEEEEHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
KGRYTQAIEDLTNLRTFYPTGQYAEQSLLDMMYAQYASGKYETAAASAEQFIRLYPSNPQ
CCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCC
VSYAYYVRGVANMQGSSEGLKLFKLNQAERDTAYYRIAFANFQELLNKYPNSPYAPDAAQ
EEEEEEEEEHHCCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCHHH
RMTFIYNQFAESEMSAANWYIEREAYVAAVNRAKWVFQYYPLSESVPDAIAVLAYSHEKL
HHHHHHHHHHHHHHHHHHEEEECHHHHHHHHCCEEEEEEECCCCCCCHHHHHEEECCCCC
GLTDLANEYKTLLQINYPNMLSADGRVKLNTKRERSLVNKLTFGQLSRFDKDTTVSTGNY
CHHHHHHHHHHEEEECCCCEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEECCCC
SGATKTQVIRNATQLRLPSDNAANTAAPSSTSPLRLTDDNRRVRLGAVENDSIDMTDSN
CCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]