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The map label for this gene is ocd2 [H]

Identifier: 93005806

GI number: 93005806

Start: 1166512

End: 1167513

Strand: Reverse

Name: ocd2 [H]

Synonym: Pcryo_0978

Alternate gene names: 93005806

Gene position: 1167513-1166512 (Counterclockwise)

Preceding gene: 93005807

Following gene: 93005805

Centisome position: 38.16

GC content: 45.51

Gene sequence:

>1002_bases
ATGAGTGAAGCAAATAGTGTTAATAGTGACGAAGGTTTATTGATCGTATCAGAAGACGCTTGCAAATCGGTGATTGATCG
CCCTTCTGCATTTATCGCCGTTGAAAATGTTTTTGCGTCAATGTCACGAGGGGACGCCTATAACTTCCCTGTTATCCGCG
AAGCCATTGGCTATGCTGATGCGTTATACGGCTTTAAATCAGGTTTTGACCGTGCAGGAAAATCACTAGGTCTAAAATCA
GGTGGCTACTGGCCAGGTAATGCGGCTAAAGGCTTGACCAATCATCAATCCACGATTTTCTTATTTAATCCAGATAATGG
TAAATTGCGTGCACTGGTCGGCGGCAATTATTTAACTGCTGTACGTACCGCCGCCGCATCGGCAGTATCAATCGCCCATC
TAGCACGTAAAGACAGCAAAGTACTTGGTATGGTCGGCGCCGGTCATCAGTCTACTTTTCAGCTGCGTGCCGCTCTTGAG
CAACGCAATTTCGAAAAAGTAGTCGCTTGGAATAAGAATAAAGATCGTCTCAAAAACCTACAAGCCGTCGCTGAAGAATT
AGGCGTACCGTTTGAAGCCGTTGAGCGTGAGCAGTTATGTAGCGAGGCGGATGTAATCATTACTATTACTTCAGCGTTTG
AGCCATTACTGATGAAAGAGTGGATCAAACCCGGTACACATATCGCCTGTATGGGTACCGATACCGTTGGTAAGCAAGAA
GTTGATGTCAATTTAATAGCTGCTGCTACTGTATTTACAGATGAGATCACGCAATCAATCAGTCTTGGTGAAACCCAGCA
TGCGATTAAGTCTGGTGCTATCAAAGAGAGTGATATTACCACGCTTGGCGATGTCATTAATGGTGAGCATCCGGGTCGCA
GCTCAGACGATGAGATTACCTTGTTCGATGGTACGGGTGTTGGTTTACAGGATTTAGCAGTAGCCTCTGCTGCCACTAAG
CTTGCCCTTGAAAAAGGTGAAGCCCAACACATCTCGTTATAA

Upstream 100 bases:

>100_bases
TTTAGTTTAGATGGGCTGTTGTAGCTTTAGCCTACAGCAGCCCTTATTCATTTAAAGTATTCAAGAATTACAAATCAAAA
AGTATAAAAAGGAATTTATA

Downstream 100 bases:

>100_bases
CTATTGTTATAATGAGCAGCCTAGAGATTGTATTGTAGAGCCGCCAAATAATGAGTGTATTTGGCGGTTTTTTATAATAC
TGATATAAGCAGAGGAAGAT

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSEANSVNSDEGLLIVSEDACKSVIDRPSAFIAVENVFASMSRGDAYNFPVIREAIGYADALYGFKSGFDRAGKSLGLKS
GGYWPGNAAKGLTNHQSTIFLFNPDNGKLRALVGGNYLTAVRTAAASAVSIAHLARKDSKVLGMVGAGHQSTFQLRAALE
QRNFEKVVAWNKNKDRLKNLQAVAEELGVPFEAVEREQLCSEADVIITITSAFEPLLMKEWIKPGTHIACMGTDTVGKQE
VDVNLIAAATVFTDEITQSISLGETQHAIKSGAIKESDITTLGDVINGEHPGRSSDDEITLFDGTGVGLQDLAVASAATK
LALEKGEAQHISL

Sequences:

>Translated_333_residues
MSEANSVNSDEGLLIVSEDACKSVIDRPSAFIAVENVFASMSRGDAYNFPVIREAIGYADALYGFKSGFDRAGKSLGLKS
GGYWPGNAAKGLTNHQSTIFLFNPDNGKLRALVGGNYLTAVRTAAASAVSIAHLARKDSKVLGMVGAGHQSTFQLRAALE
QRNFEKVVAWNKNKDRLKNLQAVAEELGVPFEAVEREQLCSEADVIITITSAFEPLLMKEWIKPGTHIACMGTDTVGKQE
VDVNLIAAATVFTDEITQSISLGETQHAIKSGAIKESDITTLGDVINGEHPGRSSDDEITLFDGTGVGLQDLAVASAATK
LALEKGEAQHISL
>Mature_332_residues
SEANSVNSDEGLLIVSEDACKSVIDRPSAFIAVENVFASMSRGDAYNFPVIREAIGYADALYGFKSGFDRAGKSLGLKSG
GYWPGNAAKGLTNHQSTIFLFNPDNGKLRALVGGNYLTAVRTAAASAVSIAHLARKDSKVLGMVGAGHQSTFQLRAALEQ
RNFEKVVAWNKNKDRLKNLQAVAEELGVPFEAVEREQLCSEADVIITITSAFEPLLMKEWIKPGTHIACMGTDTVGKQEV
DVNLIAAATVFTDEITQSISLGETQHAIKSGAIKESDITTLGDVINGEHPGRSSDDEITLFDGTGVGLQDLAVASAATKL
ALEKGEAQHISL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=225, Percent_Identity=35.1111111111111, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI62241008, Length=225, Percent_Identity=35.1111111111111, Blast_Score=125, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35443; Mature: 35312

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEANSVNSDEGLLIVSEDACKSVIDRPSAFIAVENVFASMSRGDAYNFPVIREAIGYAD
CCCCCCCCCCCCEEEEECHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALYGFKSGFDRAGKSLGLKSGGYWPGNAAKGLTNHQSTIFLFNPDNGKLRALVGGNYLTA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCHHHH
VRTAAASAVSIAHLARKDSKVLGMVGAGHQSTFQLRAALEQRNFEKVVAWNKNKDRLKNL
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
QAVAEELGVPFEAVEREQLCSEADVIITITSAFEPLLMKEWIKPGTHIACMGTDTVGKQE
HHHHHHHCCCHHHHHHHHHHCCCCEEEEEHHHHCHHHHHHHCCCCCEEEEEECCCCCCCC
VDVNLIAAATVFTDEITQSISLGETQHAIKSGAIKESDITTLGDVINGEHPGRSSDDEIT
CCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCEE
LFDGTGVGLQDLAVASAATKLALEKGEAQHISL
EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEANSVNSDEGLLIVSEDACKSVIDRPSAFIAVENVFASMSRGDAYNFPVIREAIGYAD
CCCCCCCCCCCEEEEECHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALYGFKSGFDRAGKSLGLKSGGYWPGNAAKGLTNHQSTIFLFNPDNGKLRALVGGNYLTA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCHHHH
VRTAAASAVSIAHLARKDSKVLGMVGAGHQSTFQLRAALEQRNFEKVVAWNKNKDRLKNL
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
QAVAEELGVPFEAVEREQLCSEADVIITITSAFEPLLMKEWIKPGTHIACMGTDTVGKQE
HHHHHHHCCCHHHHHHHHHHCCCCEEEEEHHHHCHHHHHHHCCCCCEEEEEECCCCCCCC
VDVNLIAAATVFTDEITQSISLGETQHAIKSGAIKESDITTLGDVINGEHPGRSSDDEIT
CCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCEE
LFDGTGVGLQDLAVASAATKLALEKGEAQHISL
EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]