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The map label for this gene is rarA [H]

Identifier: 93004934

GI number: 93004934

Start: 118937

End: 120226

Strand: Reverse

Name: rarA [H]

Synonym: Pcryo_0103

Alternate gene names: 93004934

Gene position: 120226-118937 (Counterclockwise)

Preceding gene: 93004937

Following gene: 93004933

Centisome position: 3.93

GC content: 47.67

Gene sequence:

>1290_bases
ATGCCACCTAATTTTCATGCTGATACACCCCTCGCCCAGCGTATGCGCCCGACCACGCTTGATGCCATTATTGGTCAAGA
GCACTTGTTAGCAGTAGGTGCTCCGCTAAGGCGCTTGGTAGAGCAAGGACACCTACCGTCTATTATTTTGCATGGGGAAG
CAGGTATTGGCAAAACAACCATCGCTATGCTTTTGGCGGATGCCGTTGAACGACCTTTCCATGCACTATCTGCTTTAAAT
ACTGGGGTTAAGCAGTTGCGTGAAGTATTAGACAGTAAGGATTCATTGAGTTTTGAGTCGCCGGTGGTCTTTATTGATGA
GATTCATCGGTTTAATAAAGCTCAGCAAGATGCGCTACTTGGTGCAGTAGAGTCTGGCGATATCACCTTGATTGGCGCGA
CCACCGAAAATCCTTCTTTCAGTGTCAATAATGCGCTGTTATCACGTTGCCAAGTGTATCGCCTAAAGCCATTGACGCCT
GAGCAAATCAGTGCGGTATTACAGCGGGCGCTTTTAGAAGATAATATACTGAAAAACCTATCGGTCGATTTGCAGGCGCA
AGATACGATTAGCCAGTTGGCACATGGTGATGCACGAAAAGCCCTTAATTTATTAGAGCTGGCGATTCAAACGGCTGATA
CCAAGCAATCACCGATCATTCTCGACGATACCTTAGTCGCTCGTATCGCTCAGACTGCACTCGTACGCTATGATAAAGAT
GGTGAGCAGCATTATGATATGGTATCAGCCATGATAAAGTCAGTGCGCGGCTCAGATCCTGACGCGGCACTATATTGGAT
GGCGCGTATGCTAGTGGGCGGTGAGCCTGCCGACTTCATCGCGCGGCGTTTGGTCATTTTAGCCAGTGAAGATATCGGTA
ATGCCAACCCTAATGCCCTACTCCTAGCTGATGCGGCATTGCGCAGCGTGCAATCCATCGGCATGCCAGAATCACGTATT
ATCTTGGGGCAAGTGGTGGTCTATCTGGCAACCAGTGCCAAGAGTAATAGTACTTACAACGCTATCAATGCTGCGATGAG
CTTGGCAGAAAAAGACGCCTCACCTGTGCCGCTACACCTACGTAATGGCGTGACCAAACTGATGCGTAATCAAGGTTATG
GTCAGGACTATGTCTATCCTCACGATTATCCTAATCATTATTATGCGCAAAGCTACTTACCAGACAATTTAATCGGTACG
CGCTTTTATGAATTTGCGGACAATCAGCGTGAGCAGCATAGCAAGCAGTTTATCGATTGGCTGAAAGACCAAGCGGCGAG
TAATGACTAA

Upstream 100 bases:

>100_bases
AAGACAAATATCAAAAATAGTAATTTGACTTTGAATACTATGGATAACTGTTTAATCTTACAATAAAAAGCCTTGAATAA
CAGAAGATATAGAGAATTTT

Downstream 100 bases:

>100_bases
CCATTTACAATACGGCTGACTATGTGCGGCGATCTATCAATTGTCATTACCCTTGATGATACTAATCACGTTTTTAGACA
GACTGGCCTATATAGTTTCG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MPPNFHADTPLAQRMRPTTLDAIIGQEHLLAVGAPLRRLVEQGHLPSIILHGEAGIGKTTIAMLLADAVERPFHALSALN
TGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALLGAVESGDITLIGATTENPSFSVNNALLSRCQVYRLKPLTP
EQISAVLQRALLEDNILKNLSVDLQAQDTISQLAHGDARKALNLLELAIQTADTKQSPIILDDTLVARIAQTALVRYDKD
GEQHYDMVSAMIKSVRGSDPDAALYWMARMLVGGEPADFIARRLVILASEDIGNANPNALLLADAALRSVQSIGMPESRI
ILGQVVVYLATSAKSNSTYNAINAAMSLAEKDASPVPLHLRNGVTKLMRNQGYGQDYVYPHDYPNHYYAQSYLPDNLIGT
RFYEFADNQREQHSKQFIDWLKDQAASND

Sequences:

>Translated_429_residues
MPPNFHADTPLAQRMRPTTLDAIIGQEHLLAVGAPLRRLVEQGHLPSIILHGEAGIGKTTIAMLLADAVERPFHALSALN
TGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALLGAVESGDITLIGATTENPSFSVNNALLSRCQVYRLKPLTP
EQISAVLQRALLEDNILKNLSVDLQAQDTISQLAHGDARKALNLLELAIQTADTKQSPIILDDTLVARIAQTALVRYDKD
GEQHYDMVSAMIKSVRGSDPDAALYWMARMLVGGEPADFIARRLVILASEDIGNANPNALLLADAALRSVQSIGMPESRI
ILGQVVVYLATSAKSNSTYNAINAAMSLAEKDASPVPLHLRNGVTKLMRNQGYGQDYVYPHDYPNHYYAQSYLPDNLIGT
RFYEFADNQREQHSKQFIDWLKDQAASND
>Mature_428_residues
PPNFHADTPLAQRMRPTTLDAIIGQEHLLAVGAPLRRLVEQGHLPSIILHGEAGIGKTTIAMLLADAVERPFHALSALNT
GVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALLGAVESGDITLIGATTENPSFSVNNALLSRCQVYRLKPLTPE
QISAVLQRALLEDNILKNLSVDLQAQDTISQLAHGDARKALNLLELAIQTADTKQSPIILDDTLVARIAQTALVRYDKDG
EQHYDMVSAMIKSVRGSDPDAALYWMARMLVGGEPADFIARRLVILASEDIGNANPNALLLADAALRSVQSIGMPESRII
LGQVVVYLATSAKSNSTYNAINAAMSLAEKDASPVPLHLRNGVTKLMRNQGYGQDYVYPHDYPNHYYAQSYLPDNLIGTR
FYEFADNQREQHSKQFIDWLKDQAASND

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=41.7233560090703, Blast_Score=299, Evalue=3e-81,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=37.6417233560091, Blast_Score=250, Evalue=1e-66,
Organism=Escherichia coli, GI1787119, Length=424, Percent_Identity=44.3396226415094, Blast_Score=340, Evalue=9e-95,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=38.5342789598109, Blast_Score=265, Evalue=1e-71,
Organism=Saccharomyces cerevisiae, GI6324039, Length=271, Percent_Identity=24.3542435424354, Blast_Score=83, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47169; Mature: 47038

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPNFHADTPLAQRMRPTTLDAIIGQEHLLAVGAPLRRLVEQGHLPSIILHGEAGIGKTT
CCCCCCCCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
IAMLLADAVERPFHALSALNTGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GAVESGDITLIGATTENPSFSVNNALLSRCQVYRLKPLTPEQISAVLQRALLEDNILKNL
HEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
SVDLQAQDTISQLAHGDARKALNLLELAIQTADTKQSPIILDDTLVARIAQTALVRYDKD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCC
GEQHYDMVSAMIKSVRGSDPDAALYWMARMLVGGEPADFIARRLVILASEDIGNANPNAL
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCEE
LLADAALRSVQSIGMPESRIILGQVVVYLATSAKSNSTYNAINAAMSLAEKDASPVPLHL
EEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHH
RNGVTKLMRNQGYGQDYVYPHDYPNHYYAQSYLPDNLIGTRFYEFADNQREQHSKQFIDW
HHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
LKDQAASND
HHHHCCCCC
>Mature Secondary Structure 
PPNFHADTPLAQRMRPTTLDAIIGQEHLLAVGAPLRRLVEQGHLPSIILHGEAGIGKTT
CCCCCCCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
IAMLLADAVERPFHALSALNTGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GAVESGDITLIGATTENPSFSVNNALLSRCQVYRLKPLTPEQISAVLQRALLEDNILKNL
HEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
SVDLQAQDTISQLAHGDARKALNLLELAIQTADTKQSPIILDDTLVARIAQTALVRYDKD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCC
GEQHYDMVSAMIKSVRGSDPDAALYWMARMLVGGEPADFIARRLVILASEDIGNANPNAL
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCEE
LLADAALRSVQSIGMPESRIILGQVVVYLATSAKSNSTYNAINAAMSLAEKDASPVPLHL
EEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHH
RNGVTKLMRNQGYGQDYVYPHDYPNHYYAQSYLPDNLIGTRFYEFADNQREQHSKQFIDW
HHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
LKDQAASND
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]