Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 92115349

GI number: 92115349

Start: 3603715

End: 3603966

Strand: Direct

Name: rpoZ

Synonym: Csal_3234

Alternate gene names: 92115349

Gene position: 3603715-3603966 (Clockwise)

Preceding gene: 92115348

Following gene: 92115350

Centisome position: 97.49

GC content: 64.68

Gene sequence:

>252_bases
ATGGCACGCGTTACCGTAGAAGATTGCCTCGACAACGTCGATAACCGTTTCCAGCTGGTCATGGTCGCGACCCAGCGTTC
GCGCCAGCTCGCACGCGGCTCGCGCGACGCCCAACTGCCTTGGGAAAACGACAAGCCCACGGTCATGGCGCTGCGTGAAA
TCGCCGCCGGCCTGGTCGACCGCAGCATTCTCAACGAGGCCGTCGAACCGCCCGCCGCCAAGCCGCGTCCCGAGCGAGAG
TTCAACGACTGA

Upstream 100 bases:

>100_bases
GCGGCGCTCTTGTCACGCGTGGAAGACGTCGAGTAGACTCGAGGGTCCTTCCGCAGGTCCGGCTTATGCCGTTTTCATTT
CTCGATCAGGGTTCACACTC

Downstream 100 bases:

>100_bases
GTTCGCTCACTTCTCGACAGGCGCGCGCTATGTTCACCATCGACGATCTGGCAGACCGGCTGGGCGGCTACTTGCCGCCC
GAGGAAATACTGCAGGTCAA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVDRSILNEAVEPPAAKPRPERE
FND

Sequences:

>Translated_83_residues
MARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVDRSILNEAVEPPAAKPRPERE
FND
>Mature_82_residues
ARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVDRSILNEAVEPPAAKPRPEREF
ND

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=53.8461538461538, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CHRSD (Q1QSI0)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_575277.1
- STRING:   Q1QSI0
- GeneID:   4028568
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_3234
- NMPDR:   fig|290398.4.peg.1960
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- BioCyc:   CSAL290398:CSAL_3234-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9390; Mature: 9259

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVD
CCCCCHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
RSILNEAVEPPAAKPRPEREFND
HHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVD
CCCCHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
RSILNEAVEPPAAKPRPEREFND
HHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA