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The map label for this gene is omlA [H]

Identifier: 92115213

GI number: 92115213

Start: 3452422

End: 3452853

Strand: Direct

Name: omlA [H]

Synonym: Csal_3098

Alternate gene names: 92115213

Gene position: 3452422-3452853 (Clockwise)

Preceding gene: 92115211

Following gene: 92115216

Centisome position: 93.39

GC content: 60.19

Gene sequence:

>432_bases
ATGCAAAACCTGATTAAAACAGTCACCTTTTCCGTCGTCCTGGCGCTCGTCAGCGGGTGCAGCTACGTCGGCGTTTACAA
ACGCGACCTGGCACAGGGCAATCTCATCAACCAGGACATGGTCTCGCAACTGGAGACCGGCATGACCAAGGAGCAGGTAC
GCTATGTCATGGGCAGCCCCCTGCTCAAAGGTCCGTTCAACGAGGACCGCTGGGACTACGTCTTCTACCTCGACGAGGCC
TATGACGATGTGGAGGAAAAGCGTGTCACGCTGACCTTCCAGAACGGCCGGCTGGCCGATATCGATCGTCATGGCAACAT
CGAAGACGATGTCGACCTGACACCGCAAAGCGGTCCCGGCCCCGCCGTCGAAGGCAGCGGCCCCGGCGAGGGCGCCGCTG
CAATGGGCCCCAGCTACGGTCCGGAAGAATAA

Upstream 100 bases:

>100_bases
GTTCATGGTTCTGGTCGGCCATGGTTGCGGTTGCTCTTCGCAGTATCGTGGTAGGTCAGGTATGATCGACCCAGGCAACG
ATAGTGAATGATAGGCGCAA

Downstream 100 bases:

>100_bases
CGCCTCGCCATACGCTCAGCCACGCCCCCGGGCACGCGCCAGCCGCGCCTGCTTGGGGTCCAGGGCGAGCGCGCGGTAGA
CCTCGACACGATCCCCCGCC

Product: SmpA/OmlA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MQNLIKTVTFSVVLALVSGCSYVGVYKRDLAQGNLINQDMVSQLETGMTKEQVRYVMGSPLLKGPFNEDRWDYVFYLDEA
YDDVEEKRVTLTFQNGRLADIDRHGNIEDDVDLTPQSGPGPAVEGSGPGEGAAAMGPSYGPEE

Sequences:

>Translated_143_residues
MQNLIKTVTFSVVLALVSGCSYVGVYKRDLAQGNLINQDMVSQLETGMTKEQVRYVMGSPLLKGPFNEDRWDYVFYLDEA
YDDVEEKRVTLTFQNGRLADIDRHGNIEDDVDLTPQSGPGPAVEGSGPGEGAAAMGPSYGPEE
>Mature_143_residues
MQNLIKTVTFSVVLALVSGCSYVGVYKRDLAQGNLINQDMVSQLETGMTKEQVRYVMGSPLLKGPFNEDRWDYVFYLDEA
YDDVEEKRVTLTFQNGRLADIDRHGNIEDDVDLTPQSGPGPAVEGSGPGEGAAAMGPSYGPEE

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=99, Percent_Identity=39.3939393939394, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 15654; Mature: 15654

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLIKTVTFSVVLALVSGCSYVGVYKRDLAQGNLINQDMVSQLETGMTKEQVRYVMGSP
CCHHHHHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHCCC
LLKGPFNEDRWDYVFYLDEAYDDVEEKRVTLTFQNGRLADIDRHGNIEDDVDLTPQSGPG
CCCCCCCCCCCEEEEEECCHHCCHHHCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCC
PAVEGSGPGEGAAAMGPSYGPEE
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQNLIKTVTFSVVLALVSGCSYVGVYKRDLAQGNLINQDMVSQLETGMTKEQVRYVMGSP
CCHHHHHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHCCC
LLKGPFNEDRWDYVFYLDEAYDDVEEKRVTLTFQNGRLADIDRHGNIEDDVDLTPQSGPG
CCCCCCCCCCCEEEEEECCHHCCHHHCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCC
PAVEGSGPGEGAAAMGPSYGPEE
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]