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The map label for this gene is smpB

Identifier: 92115216

GI number: 92115216

Start: 3453744

End: 3454217

Strand: Direct

Name: smpB

Synonym: Csal_3101

Alternate gene names: 92115216

Gene position: 3453744-3454217 (Clockwise)

Preceding gene: 92115213

Following gene: 92115218

Centisome position: 93.43

GC content: 60.76

Gene sequence:

>474_bases
ATGGCCAAGAAAAAAGGCAATCTCGGCTCTAGTACCATCGCGCAAAACAAGAAGGCTCGCTTCGAGTACCACATCGACGA
GACCTTCGAGGCTGGCTTGTCGCTGGCCGGATGGGAAGTCAAGAGCCTGCGCGCCGGCAAGGCGCAGCTTACCGACACGT
ACATTCTGATCAAGAACGGCGAGGCATGGTTGCTGGGCAGCCATATCACCCCGCTCAACACCGTCAGCACGCATGTCGTC
GCGGATCCGTCGCGCACGCGCAAGCTGCTGCTGCATCGCAAGGAGATCGCCAAGATCTTCTCGCGCACCCAGGACAAGGG
GCACACCTGCGTGCCGCTGAAGCTGTACTGGAAGAAGAACCTGGTCAAGTGCGAGCTTGCCCTGGTCCGCGGCAAGAAGC
TGCACGACAAGCGCGCCACGGAAAAGGCCCGCGACTGGAATCGCGAAAAGGCCCGCATCATGCGCGCGCACTGA

Upstream 100 bases:

>100_bases
CGCGTATGATGGAAGGTTAACGTCAAGGCCTTGAATGATATCACGCCTTCCCCCATTTCATGGGACTAGCGGATAGGGCG
CATAGCGACATAGGGGTTCC

Downstream 100 bases:

>100_bases
CGCTTTATTTCGCCAGCGAGGTTGAACTGGCCTAGAACGGTCCCCACCTGTTAGACTGTAGGACGCTTTACGGGGGCGAC
ATGGCTTCGACGCCGGTGAC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MAKKKGNLGSSTIAQNKKARFEYHIDETFEAGLSLAGWEVKSLRAGKAQLTDTYILIKNGEAWLLGSHITPLNTVSTHVV
ADPSRTRKLLLHRKEIAKIFSRTQDKGHTCVPLKLYWKKNLVKCELALVRGKKLHDKRATEKARDWNREKARIMRAH

Sequences:

>Translated_157_residues
MAKKKGNLGSSTIAQNKKARFEYHIDETFEAGLSLAGWEVKSLRAGKAQLTDTYILIKNGEAWLLGSHITPLNTVSTHVV
ADPSRTRKLLLHRKEIAKIFSRTQDKGHTCVPLKLYWKKNLVKCELALVRGKKLHDKRATEKARDWNREKARIMRAH
>Mature_156_residues
AKKKGNLGSSTIAQNKKARFEYHIDETFEAGLSLAGWEVKSLRAGKAQLTDTYILIKNGEAWLLGSHITPLNTVSTHVVA
DPSRTRKLLLHRKEIAKIFSRTQDKGHTCVPLKLYWKKNLVKCELALVRGKKLHDKRATEKARDWNREKARIMRAH

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=156, Percent_Identity=55.1282051282051, Blast_Score=181, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_CHRSD (Q1QSW3)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_575144.1
- ProteinModelPortal:   Q1QSW3
- SMR:   Q1QSW3
- STRING:   Q1QSW3
- GeneID:   4028742
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_3101
- NMPDR:   fig|290398.4.peg.2804
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   CSAL290398:CSAL_3101-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17926; Mature: 17795

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKKGNLGSSTIAQNKKARFEYHIDETFEAGLSLAGWEVKSLRAGKAQLTDTYILIKNG
CCCCCCCCCCHHHHCCCCCEEEEECCHHHHCCCEECCCCHHHHCCCCCEECEEEEEEECC
EAWLLGSHITPLNTVSTHVVADPSRTRKLLLHRKEIAKIFSRTQDKGHTCVPLKLYWKKN
CEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
LVKCELALVRGKKLHDKRATEKARDWNREKARIMRAH
CEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHEECCC
>Mature Secondary Structure 
AKKKGNLGSSTIAQNKKARFEYHIDETFEAGLSLAGWEVKSLRAGKAQLTDTYILIKNG
CCCCCCCCCHHHHCCCCCEEEEECCHHHHCCCEECCCCHHHHCCCCCEECEEEEEEECC
EAWLLGSHITPLNTVSTHVVADPSRTRKLLLHRKEIAKIFSRTQDKGHTCVPLKLYWKKN
CEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
LVKCELALVRGKKLHDKRATEKARDWNREKARIMRAH
CEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA