Click here to switch to the map view.

The map label for this gene is ydaL [H]

Identifier: 92114586

GI number: 92114586

Start: 2775348

End: 2775965

Strand: Direct

Name: ydaL [H]

Synonym: Csal_2468

Alternate gene names: 92114586

Gene position: 2775348-2775965 (Clockwise)

Preceding gene: 92114580

Following gene: 92114589

Centisome position: 75.08

GC content: 69.9

Gene sequence:

>618_bases
GTGCCGCCCTTTGGGAGTTTCGTCATGAGCCGACGCCGTGGCCCGCCCGACGACGCCGACATCAACCTGTTCCGCCAGGC
GCTGGAAAACGCCGGCGTGCGCCGCCTGCATGCCAACCGCGCCGACCCCGGACAAGCGCGCCGCCGCGATGACGACGATG
CCCTGGCCGAGCGCCGCGCGGCCGCGACCAGCGCCGATAGCCAGGCGCCGACCAGCCGCACCAGCGACGGCCGTGTGGAG
CCGGTGCGTCCCAGCGAGGCACTGGACTTCGCGGTGCCCGATCTCCCCTATCGCACACGCACGCAACTCAAGCGCGGCAA
TATCGCCTGGGAAGCCGGTCTGGACCTGCACGGCTACACCGTCAACGATGCCCGCGCGCAACTGGAAGCCTTCCTCCATG
ATGCCCACGGGCAGCGGTGGCGCTGCGTGCTCGTCGTTCATGGCAAGGCTCGCGCCTCGCAGTTGAGCGAGCGCGACGAT
TACCCCGTCATCAAGAGCCACGTCAACGCCTGGCTGCGCGAATGGCCGTCCGTGCTGGCCTTCTGCTCGGCGAAGGATGC
GGATGGCGGCACCGGTGCGGTCTACGTGCTGCTGCGCCGCCGCGGCGACGCTCTATAG

Upstream 100 bases:

>100_bases
GTCCTGTTTAGCGGTTCCGTGGAACAGGCGATTGTACCCGGACGGCGCGCCGGTTCACAGCCGTTGGCAAGTCGCTATAC
TGGGGGCTTCGCAACCGACC

Downstream 100 bases:

>100_bases
TCCGCGAACCAGCCGGCTAGCGGGACGACGGCGTGTTTCGCCCCGACATCACGGGATAGCGCCGGGCATCCGGCACATCG
CCTTCCGCCACGGTCATGTC

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MPPFGSFVMSRRRGPPDDADINLFRQALENAGVRRLHANRADPGQARRRDDDDALAERRAAATSADSQAPTSRTSDGRVE
PVRPSEALDFAVPDLPYRTRTQLKRGNIAWEAGLDLHGYTVNDARAQLEAFLHDAHGQRWRCVLVVHGKARASQLSERDD
YPVIKSHVNAWLREWPSVLAFCSAKDADGGTGAVYVLLRRRGDAL

Sequences:

>Translated_205_residues
MPPFGSFVMSRRRGPPDDADINLFRQALENAGVRRLHANRADPGQARRRDDDDALAERRAAATSADSQAPTSRTSDGRVE
PVRPSEALDFAVPDLPYRTRTQLKRGNIAWEAGLDLHGYTVNDARAQLEAFLHDAHGQRWRCVLVVHGKARASQLSERDD
YPVIKSHVNAWLREWPSVLAFCSAKDADGGTGAVYVLLRRRGDAL
>Mature_204_residues
PPFGSFVMSRRRGPPDDADINLFRQALENAGVRRLHANRADPGQARRRDDDDALAERRAAATSADSQAPTSRTSDGRVEP
VRPSEALDFAVPDLPYRTRTQLKRGNIAWEAGLDLHGYTVNDARAQLEAFLHDAHGQRWRCVLVVHGKARASQLSERDDY
PVIKSHVNAWLREWPSVLAFCSAKDADGGTGAVYVLLRRRGDAL

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=130, Percent_Identity=30, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 22779; Mature: 22647

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPFGSFVMSRRRGPPDDADINLFRQALENAGVRRLHANRADPGQARRRDDDDALAERRA
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEHHCCCCCCCHHHCCCCHHHHHHHHH
AATSADSQAPTSRTSDGRVEPVRPSEALDFAVPDLPYRTRTQLKRGNIAWEAGLDLHGYT
HHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCEEEECCCCCCCEE
VNDARAQLEAFLHDAHGQRWRCVLVVHGKARASQLSERDDYPVIKSHVNAWLREWPSVLA
CCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FCSAKDADGGTGAVYVLLRRRGDAL
HHCCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
PPFGSFVMSRRRGPPDDADINLFRQALENAGVRRLHANRADPGQARRRDDDDALAERRA
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEHHCCCCCCCHHHCCCCHHHHHHHHH
AATSADSQAPTSRTSDGRVEPVRPSEALDFAVPDLPYRTRTQLKRGNIAWEAGLDLHGYT
HHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCEEEECCCCCCCEE
VNDARAQLEAFLHDAHGQRWRCVLVVHGKARASQLSERDDYPVIKSHVNAWLREWPSVLA
CCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FCSAKDADGGTGAVYVLLRRRGDAL
HHCCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]