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The map label for this gene is kdsD [H]

Identifier: 92114343

GI number: 92114343

Start: 2493962

End: 2494942

Strand: Direct

Name: kdsD [H]

Synonym: Csal_2221

Alternate gene names: 92114343

Gene position: 2493962-2494942 (Clockwise)

Preceding gene: 92114333

Following gene: 92114344

Centisome position: 67.47

GC content: 67.79

Gene sequence:

>981_bases
ATGAACACCGTCACCGATCATGATTACCGCGCCAGCGCCCGCCGTACGCTGACCCTCGAATCGCATGCCGTGGCCGCCTT
GATCGAACGCCTCGACGAAGCGTTCGATCACGCCTGCCAGCTATTTCTCGCCTGCGAGGGACGCATCATCGTCACCGGCA
TGGGCAAGTCCGGGCATATCGCCCGCAAGATTGCCGCGACCCTGGCCAGCACGGGCACGCCGGCGTTTTACGTTCACCCC
GGCGAGGCCAGCCATGGCGACATGGGCATGATCACCGCGCGCGACGTGGTCCTGGCGCTGTCCAATTCCGGCGAGACCGC
CGAGGTCACGGCGCTGCTGCCGCTTCTCAAGCGCATGGGCACCCCTCTGGTCAGCATGACCGGGCGCCCGGGCTCGAGCC
TGGCGCGGCATGCCGAAGCTCACCTGGACACCGCGGTGGATCGCGAGGCGTGCCCGCTCGACCTGGCCCCGACCGCGTCG
ACCACTGCCGCCCTGGCCATGGGCGATGCCCTGGCGGTGGCCTTGCTCGAGGCACGCGGCTTCACCGCCGAGGATTTTGC
CCTGTCGCATCCCGGCGGTAGCCTGGGCCGGCGATTGCTGCTCAAGGTCGAAGACCTCATGCATCAGGGCGATCGCCTGC
CCCGGGTGGCGCTGGGCAGCCCACTGCGCGATGCCTTGCTGGAGATCACGCGTCAGGGCCTGGGATTCACCTGCGTGCTC
GACGAGGACGGCCGCCTCGCCGGGGTCTACACCGACGGCGACCTGCGTCGCACCCTCGACCATCATGACGATCTGCGCCA
GCTGCGCGTGGACGACGTCATGACCCACGGCGGCAAGACGATTCGTCCTCAATTGCTGGCTGCCGAGGCGGTCAAGATCA
TGGAAGACAATCGCATCACAGCCCTGGCCGTGGTCGACGACCAGGGCCATCCGGTCGGCGTCCTGCACATGCACGACCTG
CTGGCCAGCGGCGTCATCTGA

Upstream 100 bases:

>100_bases
CCGACGATGAGTGCGTTTAATAAGCGCCCGATCTCACCCGCCATTTCCTGCAGGCACGCGCCGCTTGAGCCAAAGGCCGC
GAAGGGCAACAATCATCACC

Downstream 100 bases:

>100_bases
GGAGAGTCCATGACACGATCCAGCGAATGGCAAGACAAGGCGCGCCGCATCCGCTTGCTGGCCCTGGATGTGGACGGCGT
GCTCACCGACGGCACGCTCC

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNTVTDHDYRASARRTLTLESHAVAALIERLDEAFDHACQLFLACEGRIIVTGMGKSGHIARKIAATLASTGTPAFYVHP
GEASHGDMGMITARDVVLALSNSGETAEVTALLPLLKRMGTPLVSMTGRPGSSLARHAEAHLDTAVDREACPLDLAPTAS
TTAALAMGDALAVALLEARGFTAEDFALSHPGGSLGRRLLLKVEDLMHQGDRLPRVALGSPLRDALLEITRQGLGFTCVL
DEDGRLAGVYTDGDLRRTLDHHDDLRQLRVDDVMTHGGKTIRPQLLAAEAVKIMEDNRITALAVVDDQGHPVGVLHMHDL
LASGVI

Sequences:

>Translated_326_residues
MNTVTDHDYRASARRTLTLESHAVAALIERLDEAFDHACQLFLACEGRIIVTGMGKSGHIARKIAATLASTGTPAFYVHP
GEASHGDMGMITARDVVLALSNSGETAEVTALLPLLKRMGTPLVSMTGRPGSSLARHAEAHLDTAVDREACPLDLAPTAS
TTAALAMGDALAVALLEARGFTAEDFALSHPGGSLGRRLLLKVEDLMHQGDRLPRVALGSPLRDALLEITRQGLGFTCVL
DEDGRLAGVYTDGDLRRTLDHHDDLRQLRVDDVMTHGGKTIRPQLLAAEAVKIMEDNRITALAVVDDQGHPVGVLHMHDL
LASGVI
>Mature_326_residues
MNTVTDHDYRASARRTLTLESHAVAALIERLDEAFDHACQLFLACEGRIIVTGMGKSGHIARKIAATLASTGTPAFYVHP
GEASHGDMGMITARDVVLALSNSGETAEVTALLPLLKRMGTPLVSMTGRPGSSLARHAEAHLDTAVDREACPLDLAPTAS
TTAALAMGDALAVALLEARGFTAEDFALSHPGGSLGRRLLLKVEDLMHQGDRLPRVALGSPLRDALLEITRQGLGFTCVL
DEDGRLAGVYTDGDLRRTLDHHDDLRQLRVDDVMTHGGKTIRPQLLAAEAVKIMEDNRITALAVVDDQGHPVGVLHMHDL
LASGVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=319, Percent_Identity=57.3667711598746, Blast_Score=386, Evalue=1e-109,
Organism=Escherichia coli, GI87082151, Length=315, Percent_Identity=49.8412698412698, Blast_Score=299, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34740; Mature: 34740

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVTDHDYRASARRTLTLESHAVAALIERLDEAFDHACQLFLACEGRIIVTGMGKSGHI
CCCCCCCCHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCHH
ARKIAATLASTGTPAFYVHPGEASHGDMGMITARDVVLALSNSGETAEVTALLPLLKRMG
HHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHC
TPLVSMTGRPGSSLARHAEAHLDTAVDREACPLDLAPTASTTAALAMGDALAVALLEARG
CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
FTAEDFALSHPGGSLGRRLLLKVEDLMHQGDRLPRVALGSPLRDALLEITRQGLGFTCVL
CCHHHCEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHCCCCEEEEE
DEDGRLAGVYTDGDLRRTLDHHDDLRQLRVDDVMTHGGKTIRPQLLAAEAVKIMEDNRIT
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEE
ALAVVDDQGHPVGVLHMHDLLASGVI
EEEEECCCCCCEEEHHHHHHHHHCCC
>Mature Secondary Structure
MNTVTDHDYRASARRTLTLESHAVAALIERLDEAFDHACQLFLACEGRIIVTGMGKSGHI
CCCCCCCCHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCHH
ARKIAATLASTGTPAFYVHPGEASHGDMGMITARDVVLALSNSGETAEVTALLPLLKRMG
HHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHC
TPLVSMTGRPGSSLARHAEAHLDTAVDREACPLDLAPTASTTAALAMGDALAVALLEARG
CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
FTAEDFALSHPGGSLGRRLLLKVEDLMHQGDRLPRVALGSPLRDALLEITRQGLGFTCVL
CCHHHCEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHCCCCEEEEE
DEDGRLAGVYTDGDLRRTLDHHDDLRQLRVDDVMTHGGKTIRPQLLAAEAVKIMEDNRIT
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEE
ALAVVDDQGHPVGVLHMHDLLASGVI
EEEEECCCCCCEEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]