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The map label for this gene is ycfJ [H]

Identifier: 92113657

GI number: 92113657

Start: 1745777

End: 1746322

Strand: Direct

Name: ycfJ [H]

Synonym: Csal_1533

Alternate gene names: 92113657

Gene position: 1745777-1746322 (Clockwise)

Preceding gene: 92113656

Following gene: 92113659

Centisome position: 47.23

GC content: 66.85

Gene sequence:

>546_bases
ATGAACAAGCCCATCATCATTGGCAGTGCCATTGCCGCACTGGGGATCGCCGGCGGCGTCGCGATCGGCGCCTACCAGCA
GGGAAATGCCGGCCCCGAGTATGCCGACATCGTCGATGTCGCGCCCATCGTCGAAACGCAGCAGGTGCCCCGTGAGGTCT
GCCGCGACGTGACCGTCACCAAGCGGCGCCCCGTGCAGGACGAGCATCAGCTGGCCGGGTCGGCCATTGGCGGCCTGGTG
GGTGGCGTGGTCGGCAATCAGTTCGGCGGGGGAAGCGGCAAGACGCTGGCAACCGTGGCCGGTGCACTCGGCGGCGGCTA
TGCCGGCAACAAAGTGCAGGAGCGCCTGCAGGACGGCGATACCTACACGACCACGCAGCGGCGGTGCGAAACCGTCAACG
ACGCGCAGAGCGAAACGGTGGGCTTCAAGGTTCGGTATCGGGTGGACGGCCAGTCGCACGAGGTCAGGCTCGACGAAAAG
CCCGATGGCGAGCGTGTGCCGCTGCGTGATGGCAAGCCGCGCTGGGATGAGGTGACCTCATCGTGA

Upstream 100 bases:

>100_bases
GCTTGCCGAGTGGACGCGACAGTCAGGCGCCCGGGCACCAGGCCACCGACAGGAGGTCGGCGGGGTGCCCGTGGCTCGCG
TGAATACAAGGAGGCAAGAG

Downstream 100 bases:

>100_bases
GGCATTGCCGGCTTGCCCATCGAGCCCACCACTAGACATGCCTCGCCAGGCAAGACGACGACGCCCCGGCATGATCCATG
CCGGGGCGTCGTTCGGGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNKPIIIGSAIAALGIAGGVAIGAYQQGNAGPEYADIVDVAPIVETQQVPREVCRDVTVTKRRPVQDEHQLAGSAIGGLV
GGVVGNQFGGGSGKTLATVAGALGGGYAGNKVQERLQDGDTYTTTQRRCETVNDAQSETVGFKVRYRVDGQSHEVRLDEK
PDGERVPLRDGKPRWDEVTSS

Sequences:

>Translated_181_residues
MNKPIIIGSAIAALGIAGGVAIGAYQQGNAGPEYADIVDVAPIVETQQVPREVCRDVTVTKRRPVQDEHQLAGSAIGGLV
GGVVGNQFGGGSGKTLATVAGALGGGYAGNKVQERLQDGDTYTTTQRRCETVNDAQSETVGFKVRYRVDGQSHEVRLDEK
PDGERVPLRDGKPRWDEVTSS
>Mature_181_residues
MNKPIIIGSAIAALGIAGGVAIGAYQQGNAGPEYADIVDVAPIVETQQVPREVCRDVTVTKRRPVQDEHQLAGSAIGGLV
GGVVGNQFGGGSGKTLATVAGALGGGYAGNKVQERLQDGDTYTTTQRRCETVNDAQSETVGFKVRYRVDGQSHEVRLDEK
PDGERVPLRDGKPRWDEVTSS

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=168, Percent_Identity=49.4047619047619, Blast_Score=166, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 19046; Mature: 19046

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPIIIGSAIAALGIAGGVAIGAYQQGNAGPEYADIVDVAPIVETQQVPREVCRDVTVT
CCCCEEEHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
KRRPVQDEHQLAGSAIGGLVGGVVGNQFGGGSGKTLATVAGALGGGYAGNKVQERLQDGD
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCC
TYTTTQRRCETVNDAQSETVGFKVRYRVDGQSHEVRLDEKPDGERVPLRDGKPRWDEVTS
CCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
S
C
>Mature Secondary Structure
MNKPIIIGSAIAALGIAGGVAIGAYQQGNAGPEYADIVDVAPIVETQQVPREVCRDVTVT
CCCCEEEHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
KRRPVQDEHQLAGSAIGGLVGGVVGNQFGGGSGKTLATVAGALGGGYAGNKVQERLQDGD
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCC
TYTTTQRRCETVNDAQSETVGFKVRYRVDGQSHEVRLDEKPDGERVPLRDGKPRWDEVTS
CCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]