Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 92112591

GI number: 92112591

Start: 506019

End: 507854

Strand: Direct

Name: yciR [C]

Synonym: Csal_0458

Alternate gene names: 92112591

Gene position: 506019-507854 (Clockwise)

Preceding gene: 92112588

Following gene: 92112601

Centisome position: 13.69

GC content: 66.34

Gene sequence:

>1836_bases
ATGTGGTCCGTCTTCACGCTCAACCGTCCCCTGGTCTGGACGGGCATTGCCGCCATGGCTTCCATGAGCCTCTTGCCGAC
GCTGATGTTGCGAATGGCGGCATTGGTCGTGGTGCTGGTGGGAGGATGGGACGCCTGGCGGCAAATCCGTCTGGAAGCGA
CGCGTCGTCGCTTGACCGAGACGGCCCTCACCTTGTCGCCCGATGGCGTGTTGATCTCCAACGCCCAGAACCGTATCCAG
GCGGTGAACCCGGCCTTCACGCAGATCACCGGTTACAGCGTCGACGAGATTCGCGGCCTCGACCCTTCGGTACTGTCGTC
CGGACGCCACGACAAGGCCTTCTACGAACGATACTGGCAGACCCTCAATGCCACCGGGCAGTGGGAGGGCGAGGTCTGGA
ATCAGCGCAAGCATGGCGACGAGTTCCCCGAGTGGTTGCGGGTGCACGCGGTGACCGATGCCAAGGGACGCGTGACGCAC
TACGTGGGGCTGTTTACCGACATCAGCCGCCACAAGGCGCGGGAGCAGGATCTTCAGCGCATCGGCTTCGAGGACCCGTT
GACCGGGCTGCCCAATCGGCGGCGCTTGCACGACTTGCTGGCATCACGCCTGCAGCGCCTGCGGGCGGGGGAGGAGCTGG
ACATCGCGCTCATCGATATCGACGGCTTCAAGGCGGTCAACGATGCCATGGGCGTCGACAAGGGGGACCGTCTGCTGTCG
CGTTTCGGTCAGCGGCTCGCGGCCTTCGTCGCCGGGGGCGTGGTGGGACGCCTGGGGGGCGACGAGTTCATGGCCATCCG
CACCACGACCTTCGATGATCACGAGCAATGGGTGGAGGAACTGCGGGGACACCTCAGCGAGCCCTTCGAGATCGGCGAGA
CGCCGCTGCGCCTGGGGCTCACCATCGGCAGTTGCCGGTCCCCCGACGATGGCCGCGATGCCGGGGTCCTGTTCCAGCGG
CTGGAGTCGGCGCTGTATGCCGCCAAGCGTCATGGGCGCAACCACAGCCGTCGCTTTCGTCCCTCGCTGGAGGTGGAAGG
CGATCCGCAGCTCGAACTGCTCAACGAATTGCGCCAGGCGCTGGCGCATGGCACGCAACTGGAGCTTTTCTACCAGACAC
AGCACTATCTCGACGATGGACGGCTGGCCGGGATGGAAGCCCTGCTGCGCTGGTACCATCCGACGCAGGGCATGATTTCG
CCGGCCAGCTTCATTCCCCTGGCCGAGCGTCACGGGTTGATGAGCGCGCTGGGCGACTGGGTGATCGAGCGCGCCTGCGC
CCAGGTGGCGGCCTGGCGCCAGCAGGGGGTGTCGTTCGTGCCGGTGTGGATCAACATCTCCGCGGTGCAGCTCATCCAGG
GCGACCTCGAGGCCAAGCTGTCCGCCAGCCTGGCCAAGTATCACGTGCCGGCCGCCATGCTGGGGTTGGAGCTGACCGAA
TCGGTACTGCTCGACGAGCGGGCCGGGGATATCTCGGCGCGACTCGTCGCTCTGCGCGACAAGGGCCATCCGATCGCCAT
CGACGATTTCGGTACCGGCTATTCCTCGATGGCGTATCTCAAGCAACTGCCGGTGGACAAGCTGAAACTCGACCGGGCCT
TCGTGCGGGCCCTGCCCGAGGACAGTGCCGACGCGGCGATCACCTCGGCGGTACTGGCCATGGCGCGGGGGCTGGAGCTG
GACGTGGTCGCCGAGGGCGTGGAAACCGAGGAGCAGCGTGACTTCCTCCTGGCCCAGGGGTGCGCCATGGTACAGGGCTT
CCTCTATGCGCGCCCCGAGCGGGTTGCCGATGTCGAGGCGCGCCTCAGGCGCGACGCCGAAGTGTCGCTGCCCTGA

Upstream 100 bases:

>100_bases
TGCAATCCGCGGATGGGTGCGGGTTGCGCCCATCGCAAGAGAAGGGGCATGATGCCTGCAATTCAACGAACCTCCATTTG
ATTCGAGCCGATAACACGCC

Downstream 100 bases:

>100_bases
ACGCCAGCCAGCCGCACAGGCTACCCCACACCAGGGCTTGTACCGCCACCGCCCAGGGCGCCAGCGTGACCTCCGCCAGA
CGTGCCCCGCCGAGATAGGA

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MWSVFTLNRPLVWTGIAAMASMSLLPTLMLRMAALVVVLVGGWDAWRQIRLEATRRRLTETALTLSPDGVLISNAQNRIQ
AVNPAFTQITGYSVDEIRGLDPSVLSSGRHDKAFYERYWQTLNATGQWEGEVWNQRKHGDEFPEWLRVHAVTDAKGRVTH
YVGLFTDISRHKAREQDLQRIGFEDPLTGLPNRRRLHDLLASRLQRLRAGEELDIALIDIDGFKAVNDAMGVDKGDRLLS
RFGQRLAAFVAGGVVGRLGGDEFMAIRTTTFDDHEQWVEELRGHLSEPFEIGETPLRLGLTIGSCRSPDDGRDAGVLFQR
LESALYAAKRHGRNHSRRFRPSLEVEGDPQLELLNELRQALAHGTQLELFYQTQHYLDDGRLAGMEALLRWYHPTQGMIS
PASFIPLAERHGLMSALGDWVIERACAQVAAWRQQGVSFVPVWINISAVQLIQGDLEAKLSASLAKYHVPAAMLGLELTE
SVLLDERAGDISARLVALRDKGHPIAIDDFGTGYSSMAYLKQLPVDKLKLDRAFVRALPEDSADAAITSAVLAMARGLEL
DVVAEGVETEEQRDFLLAQGCAMVQGFLYARPERVADVEARLRRDAEVSLP

Sequences:

>Translated_611_residues
MWSVFTLNRPLVWTGIAAMASMSLLPTLMLRMAALVVVLVGGWDAWRQIRLEATRRRLTETALTLSPDGVLISNAQNRIQ
AVNPAFTQITGYSVDEIRGLDPSVLSSGRHDKAFYERYWQTLNATGQWEGEVWNQRKHGDEFPEWLRVHAVTDAKGRVTH
YVGLFTDISRHKAREQDLQRIGFEDPLTGLPNRRRLHDLLASRLQRLRAGEELDIALIDIDGFKAVNDAMGVDKGDRLLS
RFGQRLAAFVAGGVVGRLGGDEFMAIRTTTFDDHEQWVEELRGHLSEPFEIGETPLRLGLTIGSCRSPDDGRDAGVLFQR
LESALYAAKRHGRNHSRRFRPSLEVEGDPQLELLNELRQALAHGTQLELFYQTQHYLDDGRLAGMEALLRWYHPTQGMIS
PASFIPLAERHGLMSALGDWVIERACAQVAAWRQQGVSFVPVWINISAVQLIQGDLEAKLSASLAKYHVPAAMLGLELTE
SVLLDERAGDISARLVALRDKGHPIAIDDFGTGYSSMAYLKQLPVDKLKLDRAFVRALPEDSADAAITSAVLAMARGLEL
DVVAEGVETEEQRDFLLAQGCAMVQGFLYARPERVADVEARLRRDAEVSLP
>Mature_611_residues
MWSVFTLNRPLVWTGIAAMASMSLLPTLMLRMAALVVVLVGGWDAWRQIRLEATRRRLTETALTLSPDGVLISNAQNRIQ
AVNPAFTQITGYSVDEIRGLDPSVLSSGRHDKAFYERYWQTLNATGQWEGEVWNQRKHGDEFPEWLRVHAVTDAKGRVTH
YVGLFTDISRHKAREQDLQRIGFEDPLTGLPNRRRLHDLLASRLQRLRAGEELDIALIDIDGFKAVNDAMGVDKGDRLLS
RFGQRLAAFVAGGVVGRLGGDEFMAIRTTTFDDHEQWVEELRGHLSEPFEIGETPLRLGLTIGSCRSPDDGRDAGVLFQR
LESALYAAKRHGRNHSRRFRPSLEVEGDPQLELLNELRQALAHGTQLELFYQTQHYLDDGRLAGMEALLRWYHPTQGMIS
PASFIPLAERHGLMSALGDWVIERACAQVAAWRQQGVSFVPVWINISAVQLIQGDLEAKLSASLAKYHVPAAMLGLELTE
SVLLDERAGDISARLVALRDKGHPIAIDDFGTGYSSMAYLKQLPVDKLKLDRAFVRALPEDSADAAITSAVLAMARGLEL
DVVAEGVETEEQRDFLLAQGCAMVQGFLYARPERVADVEARLRRDAEVSLP

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=541, Percent_Identity=31.2384473197782, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI87081921, Length=455, Percent_Identity=32.3076923076923, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI226510982, Length=449, Percent_Identity=29.6213808463252, Blast_Score=175, Evalue=8e-45,
Organism=Escherichia coli, GI1788849, Length=476, Percent_Identity=28.3613445378151, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1790496, Length=226, Percent_Identity=34.9557522123894, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=35.655737704918, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI87081980, Length=233, Percent_Identity=36.0515021459227, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI87081743, Length=228, Percent_Identity=36.4035087719298, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI1786507, Length=213, Percent_Identity=33.8028169014084, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788502, Length=231, Percent_Identity=36.3636363636364, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787055, Length=391, Percent_Identity=26.0869565217391, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI87082096, Length=260, Percent_Identity=28.8461538461538, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=30.7228915662651, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081881, Length=203, Percent_Identity=30.5418719211823, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI145693134, Length=215, Percent_Identity=31.1627906976744, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=31.9767441860465, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=30.2857142857143, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788381, Length=292, Percent_Identity=22.6027397260274, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 68153; Mature: 68153

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSVFTLNRPLVWTGIAAMASMSLLPTLMLRMAALVVVLVGGWDAWRQIRLEATRRRLTE
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TALTLSPDGVLISNAQNRIQAVNPAFTQITGYSVDEIRGLDPSVLSSGRHDKAFYERYWQ
HHEEECCCCEEECCCHHHHHHCCCHHHHCCCCCHHHHCCCCHHHHCCCCCCHHHHHHHHH
TLNATGQWEGEVWNQRKHGDEFPEWLRVHAVTDAKGRVTHYVGLFTDISRHKAREQDLQR
HHCCCCCCCCHHHCCCCCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
IGFEDPLTGLPNRRRLHDLLASRLQRLRAGEELDIALIDIDGFKAVNDAMGVDKGDRLLS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHH
RFGQRLAAFVAGGVVGRLGGDEFMAIRTTTFDDHEQWVEELRGHLSEPFEIGETPLRLGL
HHHHHHHHHHHCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEE
TIGSCRSPDDGRDAGVLFQRLESALYAAKRHGRNHSRRFRPSLEVEGDPQLELLNELRQA
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHH
LAHGTQLELFYQTQHYLDDGRLAGMEALLRWYHPTQGMISPASFIPLAERHGLMSALGDW
HHCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHH
VIERACAQVAAWRQQGVSFVPVWINISAVQLIQGDLEAKLSASLAKYHVPAAMLGLELTE
HHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
SVLLDERAGDISARLVALRDKGHPIAIDDFGTGYSSMAYLKQLPVDKLKLDRAFVRALPE
HHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC
DSADAAITSAVLAMARGLELDVVAEGVETEEQRDFLLAQGCAMVQGFLYARPERVADVEA
CCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RLRRDAEVSLP
HHCCCCCCCCC
>Mature Secondary Structure
MWSVFTLNRPLVWTGIAAMASMSLLPTLMLRMAALVVVLVGGWDAWRQIRLEATRRRLTE
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TALTLSPDGVLISNAQNRIQAVNPAFTQITGYSVDEIRGLDPSVLSSGRHDKAFYERYWQ
HHEEECCCCEEECCCHHHHHHCCCHHHHCCCCCHHHHCCCCHHHHCCCCCCHHHHHHHHH
TLNATGQWEGEVWNQRKHGDEFPEWLRVHAVTDAKGRVTHYVGLFTDISRHKAREQDLQR
HHCCCCCCCCHHHCCCCCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
IGFEDPLTGLPNRRRLHDLLASRLQRLRAGEELDIALIDIDGFKAVNDAMGVDKGDRLLS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHH
RFGQRLAAFVAGGVVGRLGGDEFMAIRTTTFDDHEQWVEELRGHLSEPFEIGETPLRLGL
HHHHHHHHHHHCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEE
TIGSCRSPDDGRDAGVLFQRLESALYAAKRHGRNHSRRFRPSLEVEGDPQLELLNELRQA
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHH
LAHGTQLELFYQTQHYLDDGRLAGMEALLRWYHPTQGMISPASFIPLAERHGLMSALGDW
HHCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHH
VIERACAQVAAWRQQGVSFVPVWINISAVQLIQGDLEAKLSASLAKYHVPAAMLGLELTE
HHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
SVLLDERAGDISARLVALRDKGHPIAIDDFGTGYSSMAYLKQLPVDKLKLDRAFVRALPE
HHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC
DSADAAITSAVLAMARGLELDVVAEGVETEEQRDFLLAQGCAMVQGFLYARPERVADVEA
CCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RLRRDAEVSLP
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]