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The map label for this gene is recF

Identifier: 92112139

GI number: 92112139

Start: 2832

End: 3917

Strand: Direct

Name: recF

Synonym: Csal_0003

Alternate gene names: 92112139

Gene position: 2832-3917 (Clockwise)

Preceding gene: 92112138

Following gene: 92112140

Centisome position: 0.08

GC content: 61.88

Gene sequence:

>1086_bases
ATGCCCCTCGAACGCCTTAATTTCCTGGGCCTGCGCAATCTGGCGGCGCTCGACATGCGCCCCGGGCCGGGGATCAATCT
GATCACCGGGGCCAACGGCAGCGGCAAGACCAGCTTGCTGGAAGGCATGCATGTGCTGGGAATGGCACGTTCCTTTCGAA
CCCAGAAGCTCAAGCATGCGATCGCGCATGATGCCGATGCCGTCACCCTGCATGGACGCGTCGCCGGCGATCCACCGGTC
GCGCTGGGCGTACGCCGTGCACGCGATGCCTCCGAGCTCGAGATTCGCCTCGACGGCGAGCGCGGCGTTCGTGTGGCGCG
TCTTGCCGAGGCGCTGCCGCTGCAGCTGATCAATCCTGATGCCTTTCGTCTGCTGGAAGGCTCGCCGGCGGCGCGGCGAG
AGTTTCTCGATTGGGGCGTGTTTCACGTGAAACACGAGTTTTTCGAGGCATGGCGGCGAGTGCGACGTGCGCTGAAACAT
CGGAATGCCCTGCTCAGGCATGATAGAATCGATGCACGTTCGATGCGCGTATGGGAGCAGGAACTCGCGCATTGGAGCGA
GCTTCTGGACGCCCTGCGCAGCGAGTACATGGCGCAATTCGCCAAGGCATTCGAAGATACATTGCATGAGTTGCTGCCGC
TTTCCGGCTTGTCGCTTCGCTACTATCGCGGTTGGGACAAGCAGCGTGGTCTGCTGGAGGTGCTCGAAGGCGGTCGGGAC
ACCGACCGACAGATGGGGTTCACCCAGCAAGGGCCGCAACGCGCCGATTTGCGCTTGCGCATCGGCAAGCGTGCTGCCGT
GGAGGAGTTGTCTCGCGGTCAGCAAAAGCTGGTGGTGAGTGCACTGAAATTGGCCCAGGGGCGCTTGCTCGATGAACTGA
CGGGGCGCACCTGCGTTTATCTGATCGATGACCTGCCCGCCGAGCTGGACGTTACGCATCGGCGGATTTTCTGTCATTGG
CTGGAGCGCTTGCGCTGTCAAGTCTTTATTACCAGCGTCGAGCGCGAGGCGCTCGCGAATGCATGGCAGTCGGAAACGGA
TGTCGCGATGTTTCACGTGGAACACGGGCGACTGCTCACGGAATGA

Upstream 100 bases:

>100_bases
GATCGCCTTGTCCGCCCCTTCACGCGGCTCCGTCCCGGGCGCCTCGTCGGCTCCCTCGCCGATGTCACGCCGGGACGGCG
CGCTCTCTTGATGTCCTCGT

Downstream 100 bases:

>100_bases
CTTCACGACGGAGTAGGCAATGAGCGAACAAGCTTACGACTCATCGAGCATCAAGGTCCTCAAGGGACTGGATGCGGTAC
GCAAGCGCCCCGGCATGTAC

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MPLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHAIAHDADAVTLHGRVAGDPPV
ALGVRRARDASELEIRLDGERGVRVARLAEALPLQLINPDAFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKH
RNALLRHDRIDARSMRVWEQELAHWSELLDALRSEYMAQFAKAFEDTLHELLPLSGLSLRYYRGWDKQRGLLEVLEGGRD
TDRQMGFTQQGPQRADLRLRIGKRAAVEELSRGQQKLVVSALKLAQGRLLDELTGRTCVYLIDDLPAELDVTHRRIFCHW
LERLRCQVFITSVEREALANAWQSETDVAMFHVEHGRLLTE

Sequences:

>Translated_361_residues
MPLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHAIAHDADAVTLHGRVAGDPPV
ALGVRRARDASELEIRLDGERGVRVARLAEALPLQLINPDAFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKH
RNALLRHDRIDARSMRVWEQELAHWSELLDALRSEYMAQFAKAFEDTLHELLPLSGLSLRYYRGWDKQRGLLEVLEGGRD
TDRQMGFTQQGPQRADLRLRIGKRAAVEELSRGQQKLVVSALKLAQGRLLDELTGRTCVYLIDDLPAELDVTHRRIFCHW
LERLRCQVFITSVEREALANAWQSETDVAMFHVEHGRLLTE
>Mature_360_residues
PLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHAIAHDADAVTLHGRVAGDPPVA
LGVRRARDASELEIRLDGERGVRVARLAEALPLQLINPDAFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKHR
NALLRHDRIDARSMRVWEQELAHWSELLDALRSEYMAQFAKAFEDTLHELLPLSGLSLRYYRGWDKQRGLLEVLEGGRDT
DRQMGFTQQGPQRADLRLRIGKRAAVEELSRGQQKLVVSALKLAQGRLLDELTGRTCVYLIDDLPAELDVTHRRIFCHWL
ERLRCQVFITSVEREALANAWQSETDVAMFHVEHGRLLTE

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family

Homologues:

Organism=Escherichia coli, GI1790135, Length=359, Percent_Identity=40.6685236768802, Blast_Score=273, Evalue=2e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECF_CHRSD (Q1R1P0)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_572067.1
- ProteinModelPortal:   Q1R1P0
- SMR:   Q1R1P0
- STRING:   Q1R1P0
- GeneID:   4027322
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_0003
- NMPDR:   fig|290398.4.peg.145
- eggNOG:   COG1195
- HOGENOM:   HBG645124
- OMA:   GQQRTLV
- ProtClustDB:   PRK00064
- BioCyc:   CSAL290398:CSAL_0003-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_00365
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- TIGRFAMs:   TIGR00611

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 41155; Mature: 41024

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00617 RECF_1; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHA
CCCCHHHHHHHCCHHEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IAHDADAVTLHGRVAGDPPVALGVRRARDASELEIRLDGERGVRVARLAEALPLQLINPD
HHCCCCEEEEECEECCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCEEECCC
AFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKHRNALLRHDRIDARSMRVWEQ
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ELAHWSELLDALRSEYMAQFAKAFEDTLHELLPLSGLSLRYYRGWDKQRGLLEVLEGGRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHEECCCCCCCCHHHHHHCCCC
TDRQMGFTQQGPQRADLRLRIGKRAAVEELSRGQQKLVVSALKLAQGRLLDELTGRTCVY
CHHHCCCCCCCCCCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
LIDDLPAELDVTHRRIFCHWLERLRCQVFITSVEREALANAWQSETDVAMFHVEHGRLLT
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
E
C
>Mature Secondary Structure 
PLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHA
CCCHHHHHHHCCHHEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IAHDADAVTLHGRVAGDPPVALGVRRARDASELEIRLDGERGVRVARLAEALPLQLINPD
HHCCCCEEEEECEECCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCEEECCC
AFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKHRNALLRHDRIDARSMRVWEQ
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ELAHWSELLDALRSEYMAQFAKAFEDTLHELLPLSGLSLRYYRGWDKQRGLLEVLEGGRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHEECCCCCCCCHHHHHHCCCC
TDRQMGFTQQGPQRADLRLRIGKRAAVEELSRGQQKLVVSALKLAQGRLLDELTGRTCVY
CHHHCCCCCCCCCCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
LIDDLPAELDVTHRRIFCHWLERLRCQVFITSVEREALANAWQSETDVAMFHVEHGRLLT
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA