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The map label for this gene is trbC [H]

Identifier: 92109689

GI number: 92109689

Start: 24190

End: 24561

Strand: Reverse

Name: trbC [H]

Synonym: Nham_4568

Alternate gene names: 92109689

Gene position: 24561-24190 (Counterclockwise)

Preceding gene: 92109690

Following gene: 92109688

Centisome position: 20.23

GC content: 65.86

Gene sequence:

>372_bases
ATGTCGCGTGACCGCATGATGATCATCGGCGTCGCCGGCATGGTGTTCGCGCTCTTGCTCATCGAGCCTGCTTTCGCCTC
GACCACTGGCGGCGGCAATCTCCCTTGGGAAAGCCCGCTCCAACAGATCCAGCAATCGATCACCGGCCCCGTAGCCGGGT
TTATCGCGCTCGCGGCCGTGGCGGTCGCCGGCGGCATGCTGATCTTCGGCGGCGAGCTCAACGATTTCGCACGACGGCTG
ATGTATGTCGTGCTCGTCGCCGGCATCCTGCTCGGCGCGACGCAGATTGTCGCGCTGTTCGGCGCGAGCGGCGCCTCGAT
CGGTAACGTCGCGCCGATCGCGGACAGGGCAGGGGACTTCGGTCATGGCTGA

Upstream 100 bases:

>100_bases
CGCACGGATCGCGGCCGCCAAGTCCGCGACGTGCTGCATGTCGAGAGCTACTCGGCAGGCCAGTACCAGACCGAATCCTG
CGCCCGGAAGGAGCAGCGCC

Downstream 100 bases:

>100_bases
GGCCGGGGCCGAACTCCGACGCAACCGCATTCATCGCGCGCTGTCGCGGCCGAACCTGCTGTTCGGCGCGGATCGCGAGC
TCGTCCTGCTCACGGGCCTC

Product: conjugal transfer protein TrbC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSRDRMMIIGVAGMVFALLLIEPAFASTTGGGNLPWESPLQQIQQSITGPVAGFIALAAVAVAGGMLIFGGELNDFARRL
MYVVLVAGILLGATQIVALFGASGASIGNVAPIADRAGDFGHG

Sequences:

>Translated_123_residues
MSRDRMMIIGVAGMVFALLLIEPAFASTTGGGNLPWESPLQQIQQSITGPVAGFIALAAVAVAGGMLIFGGELNDFARRL
MYVVLVAGILLGATQIVALFGASGASIGNVAPIADRAGDFGHG
>Mature_122_residues
SRDRMMIIGVAGMVFALLLIEPAFASTTGGGNLPWESPLQQIQQSITGPVAGFIALAAVAVAGGMLIFGGELNDFARRLM
YVVLVAGILLGATQIVALFGASGASIGNVAPIADRAGDFGHG

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007039 [H]

Pfam domain/function: PF04956 TrbC [H]

EC number: NA

Molecular weight: Translated: 12488; Mature: 12357

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDRMMIIGVAGMVFALLLIEPAFASTTGGGNLPWESPLQQIQQSITGPVAGFIALAAV
CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
AVAGGMLIFGGELNDFARRLMYVVLVAGILLGATQIVALFGASGASIGNVAPIADRAGDF
HHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
GHG
CCC
>Mature Secondary Structure 
SRDRMMIIGVAGMVFALLLIEPAFASTTGGGNLPWESPLQQIQQSITGPVAGFIALAAV
CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
AVAGGMLIFGGELNDFARRLMYVVLVAGILLGATQIVALFGASGASIGNVAPIADRAGDF
HHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
GHG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]