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The map label for this gene is trbD [H]

Identifier: 92109688

GI number: 92109688

Start: 23898

End: 24197

Strand: Reverse

Name: trbD [H]

Synonym: Nham_4567

Alternate gene names: 92109688

Gene position: 24197-23898 (Counterclockwise)

Preceding gene: 92109689

Following gene: 92109687

Centisome position: 19.93

GC content: 68.33

Gene sequence:

>300_bases
ATGGCTGAGGCCGGGGCCGAACTCCGACGCAACCGCATTCATCGCGCGCTGTCGCGGCCGAACCTGCTGTTCGGCGCGGA
TCGCGAGCTCGTCCTGCTCACGGGCCTCGCCGCCGTGATCCTGATCTTCGTCGTGCTCACCTGGTATGCGGCGATCCTCG
GCGCCGCGATCTGGATCGTCGTCGTGGCGGCGCTGCGGATGATGGCCAAAGCCGACCCGATGATGCGGCGCGTCTATGCC
CGGCACATCTCCTACCGGCCGAACTACCGGGCGACGTCGACGCCCTGGCGGCGTTACTGA

Upstream 100 bases:

>100_bases
ATCCTGCTCGGCGCGACGCAGATTGTCGCGCTGTTCGGCGCGAGCGGCGCCTCGATCGGTAACGTCGCGCCGATCGCGGA
CAGGGCAGGGGACTTCGGTC

Downstream 100 bases:

>100_bases
GATCCGCCGATGGTCGCGCTGCGCTCCTTCCGACACCCCTCGCCGTCCTTCGCCGATCTCGTGCCTCACGCGGGTCTGGT
CGCCAACGGCATCGTCCTGT

Product: conjugal transfer protein TrbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MAEAGAELRRNRIHRALSRPNLLFGADRELVLLTGLAAVILIFVVLTWYAAILGAAIWIVVVAALRMMAKADPMMRRVYA
RHISYRPNYRATSTPWRRY

Sequences:

>Translated_99_residues
MAEAGAELRRNRIHRALSRPNLLFGADRELVLLTGLAAVILIFVVLTWYAAILGAAIWIVVVAALRMMAKADPMMRRVYA
RHISYRPNYRATSTPWRRY
>Mature_98_residues
AEAGAELRRNRIHRALSRPNLLFGADRELVLLTGLAAVILIFVVLTWYAAILGAAIWIVVVAALRMMAKADPMMRRVYAR
HISYRPNYRATSTPWRRY

Specific function: Unknown

COG id: COG5268

COG function: function code NU; Type IV secretory pathway, TrbD component

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016704
- InterPro:   IPR007792 [H]

Pfam domain/function: PF05101 VirB3 [H]

EC number: NA

Molecular weight: Translated: 11326; Mature: 11195

Theoretical pI: Translated: 11.96; Mature: 11.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAGAELRRNRIHRALSRPNLLFGADRELVLLTGLAAVILIFVVLTWYAAILGAAIWIV
CCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVAALRMMAKADPMMRRVYARHISYRPNYRATSTPWRRY
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEAGAELRRNRIHRALSRPNLLFGADRELVLLTGLAAVILIFVVLTWYAAILGAAIWIV
CCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVAALRMMAKADPMMRRVYARHISYRPNYRATSTPWRRY
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]