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The map label for this gene is trbB [H]

Identifier: 92109690

GI number: 92109690

Start: 24551

End: 25540

Strand: Reverse

Name: trbB [H]

Synonym: Nham_4569

Alternate gene names: 92109690

Gene position: 25540-24551 (Counterclockwise)

Preceding gene: 92109691

Following gene: 92109689

Centisome position: 21.04

GC content: 66.67

Gene sequence:

>990_bases
ATGACCGCCGGCGCCCTGGTCATGGCCGAACTTCGTTCCCATCCGCGGCTTGTCCGCAAGCTCCACGACGCATTGGGCGA
CCAGATCTGCGCCGCGCTCGACGACACGAGCGTCGTCGAAGTGATGCTCAATCCGGACGGCCGGCTGTTCATCGAACGGC
TCGGGCAGGGGATGGCGTCGGCCGGCACGATGGCGGCTGCGACCGCCGAGATCATCATCGGCAGCGTCGCGCACGCGCTG
CGATCGGAGGCGGACGACGAGCGCCCGATCATTTCCGGGGAACTGCCGATCGGCGGCCATCGCTTCGAGGGCCTGCTGCC
GCCCGTCGTTGGTGGGCCCGCCTTTACAATCCGCAAGCGGGCGTCGCGCCTGTTTGATCTCGATGATTACGTGACGCAAG
GCGTCATGACCGCCGACCAGGTCGCGGTTGTCCGCAATGCCATTGTCTCGCGCCTGAACATCGTGGTGTCCGGGGGCACC
GGCTCGGGCAAGACCACGCTCGCCAATGCCGTGATCGCCGCGATCGTTGCGCATGCGCCGGAACAGCGTCTCGTCATCCT
CGAAGATACGGCCGAGATCCAGTGCGCGGCCGAGAACGCCGTCTCGCTTCACACAAGCGACACGGTCGACATGGCGCGTC
TGCTCAAGAGCACGATGCGGCTTCGGCCGGATCGCATCATCGTCGGAGAAGTGCGCGATGGCGCCGCGCTGACGCTGCTC
AAGGCCTGGAACACCGGCCATCCCGGCGGCATCACGACCATCCACGCCAACAGCGCCCATTCCGCGCTGCGTCGTCTCGA
GCAGCTGACGGCCGAAGCCAGCCAACAGGCCATGCGCGAGGTCATCGGCGAGGCGGTCGATCTGATCGTCTCGATCGAAC
GCACGGATCGCGGCCGCCAAGTCCGCGACGTGCTGCATGTCGAGAGCTACTCGGCAGGCCAGTACCAGACCGAATCCTGC
GCCCGGAAGGAGCAGCGCCATGTCGCGTGA

Upstream 100 bases:

>100_bases
TGAGCGTCGCCGGCATCCTGCCAGCCGATCGGACGAGCTTCGAACAGGTCTATCCGCCGGGCTATTGCTCCGACCTGCGC
CGCCTTAAGCGCGCCGCAGC

Downstream 100 bases:

>100_bases
CCGCATGATGATCATCGGCGTCGCCGGCATGGTGTTCGCGCTCTTGCTCATCGAGCCTGCTTTCGCCTCGACCACTGGCG
GCGGCAATCTCCCTTGGGAA

Product: conjugal transfer protein TrbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTAGALVMAELRSHPRLVRKLHDALGDQICAALDDTSVVEVMLNPDGRLFIERLGQGMASAGTMAAATAEIIIGSVAHAL
RSEADDERPIISGELPIGGHRFEGLLPPVVGGPAFTIRKRASRLFDLDDYVTQGVMTADQVAVVRNAIVSRLNIVVSGGT
GSGKTTLANAVIAAIVAHAPEQRLVILEDTAEIQCAAENAVSLHTSDTVDMARLLKSTMRLRPDRIIVGEVRDGAALTLL
KAWNTGHPGGITTIHANSAHSALRRLEQLTAEASQQAMREVIGEAVDLIVSIERTDRGRQVRDVLHVESYSAGQYQTESC
ARKEQRHVA

Sequences:

>Translated_329_residues
MTAGALVMAELRSHPRLVRKLHDALGDQICAALDDTSVVEVMLNPDGRLFIERLGQGMASAGTMAAATAEIIIGSVAHAL
RSEADDERPIISGELPIGGHRFEGLLPPVVGGPAFTIRKRASRLFDLDDYVTQGVMTADQVAVVRNAIVSRLNIVVSGGT
GSGKTTLANAVIAAIVAHAPEQRLVILEDTAEIQCAAENAVSLHTSDTVDMARLLKSTMRLRPDRIIVGEVRDGAALTLL
KAWNTGHPGGITTIHANSAHSALRRLEQLTAEASQQAMREVIGEAVDLIVSIERTDRGRQVRDVLHVESYSAGQYQTESC
ARKEQRHVA
>Mature_328_residues
TAGALVMAELRSHPRLVRKLHDALGDQICAALDDTSVVEVMLNPDGRLFIERLGQGMASAGTMAAATAEIIIGSVAHALR
SEADDERPIISGELPIGGHRFEGLLPPVVGGPAFTIRKRASRLFDLDDYVTQGVMTADQVAVVRNAIVSRLNIVVSGGTG
SGKTTLANAVIAAIVAHAPEQRLVILEDTAEIQCAAENAVSLHTSDTVDMARLLKSTMRLRPDRIIVGEVRDGAALTLLK
AWNTGHPGGITTIHANSAHSALRRLEQLTAEASQQAMREVIGEAVDLIVSIERTDRGRQVRDVLHVESYSAGQYQTESCA
RKEQRHVA

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=121, Percent_Identity=33.8842975206612, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 35205; Mature: 35073

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00227 TUBULIN ; PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGALVMAELRSHPRLVRKLHDALGDQICAALDDTSVVEVMLNPDGRLFIERLGQGMAS
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCHHC
AGTMAAATAEIIIGSVAHALRSEADDERPIISGELPIGGHRFEGLLPPVVGGPAFTIRKR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
ASRLFDLDDYVTQGVMTADQVAVVRNAIVSRLNIVVSGGTGSGKTTLANAVIAAIVAHAP
HHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCC
EQRLVILEDTAEIQCAAENAVSLHTSDTVDMARLLKSTMRLRPDRIIVGEVRDGAALTLL
CCEEEEEECCCCEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEE
KAWNTGHPGGITTIHANSAHSALRRLEQLTAEASQQAMREVIGEAVDLIVSIERTDRGRQ
EECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHH
VRDVLHVESYSAGQYQTESCARKEQRHVA
HHHHHHHCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAGALVMAELRSHPRLVRKLHDALGDQICAALDDTSVVEVMLNPDGRLFIERLGQGMAS
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCHHC
AGTMAAATAEIIIGSVAHALRSEADDERPIISGELPIGGHRFEGLLPPVVGGPAFTIRKR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
ASRLFDLDDYVTQGVMTADQVAVVRNAIVSRLNIVVSGGTGSGKTTLANAVIAAIVAHAP
HHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCC
EQRLVILEDTAEIQCAAENAVSLHTSDTVDMARLLKSTMRLRPDRIIVGEVRDGAALTLL
CCEEEEEECCCCEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEE
KAWNTGHPGGITTIHANSAHSALRRLEQLTAEASQQAMREVIGEAVDLIVSIERTDRGRQ
EECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHH
VRDVLHVESYSAGQYQTESCARKEQRHVA
HHHHHHHCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]