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The map label for this gene is trbE [H]

Identifier: 92109687

GI number: 92109687

Start: 21435

End: 23888

Strand: Reverse

Name: trbE [H]

Synonym: Nham_4566

Alternate gene names: 92109687

Gene position: 23888-21435 (Counterclockwise)

Preceding gene: 92109688

Following gene: 92109686

Centisome position: 19.68

GC content: 63.37

Gene sequence:

>2454_bases
ATGGTCGCGCTGCGCTCCTTCCGACACCCCTCGCCGTCCTTCGCCGATCTCGTGCCTCACGCGGGTCTGGTCGCCAACGG
CATCGTCCTGTTGAAGGACGGCTCGCTGATGGCCGGCTGGTATTTCGCGGGGCCGGACTCGGAGAGCTCGACCGACGCCG
AGCGCAACGAGGTCTCGCGCCAGATCAACACTATTCTTTCGCGTCTCGGATCCGGCTGGATGATCCAGGTCGAGGCGGTG
CGCGTGCCGACCACGGATTATCCGGCACGGCAGGATTGCCATTTCCCAGATCCAGTAACGCGCGCGATCGACGACGAACG
CCGCGCCCGTTTTGAGGCGGAGAGGGGACATTTCGAGAGTCGGCACGCGATCATCCTGACCTGGCGGCCGCCGGAGCGGC
GGCGCGCTGGTCTCGCGCGCTACATCTACTCCGATGTCGAAAGCCGCTCGGCCTCCTATGCCGACACGGCGATCGAGACC
TTTCAGAACGCGATCCGTGAGATCGAGCAATATCTCGCCAGCGTTCTGTCGATCCAGCGCATGGAAACGCGCGAGGTCGA
CGAGCGGGATGGCACGCGCGTCGCGCGCTATGACGAGCTCTTTCAGTTCATCCGCTTCTGTATCACCGGCGAGAACCATC
CGGTCCGCTTGCCGGATATCCCGATGTATCTCGACTGGCTCGCGACCGCCGAACTTCAGCACGGCCTGTCGCCCATGGTC
GAGAACCGCTTTCTCGGCGTGGTGGCGATCGACGGCTTTCCGGCCGAGAGCTGGCCGGGGATTCTCAACTCGCTCGATCT
GATGCCGCTCACCTATCGCTGGTCGTCGCGTTTCATGTTCCTCGACGATCAGGATGCCCGCCAGAAGCTCGAGCGCACCC
GCAAGAAGTGGCAGCAGAAGGTACGGCCCTTCATTGACCAACTGTTCCAGACCCAAAGCCGATCGATCGACCAGGATGCG
GCCGCGATGGTGGCGGAGACGGAGGATGCCATCGCCGAAGCCTCCTCGCAGCTCGTCGCCTATGGCTATTACACGCCGGT
CATCGTGCTGTTCGACGACAACAGCACGCGCCTGCAGGAGAAGACGGAAGCCGTGCGCCGCCTGATCCAGGCGGAAGGTT
TTGGCGCGCGCATCGAGACGCTGAACGCGACCGAAGCCTTCCTCGGCAGCCTGCCGGGTAATTGGTACGCCAATATCCGC
GAGCCACTCATCAACACGCGCAACCTCGCGGACCTCATCCCCCTCAACGCGGTGTGGTCGGGCAGTCCGACCGCGCCGTG
CCCATTTTATCCGCCAAACTCGCCGCCCTTGATGCAGGTCGCGTCCGGCTCGACACCCTTCCGGATGAACCTTCATGTCG
ACGATGTCGGGCATACGCTGGTGTTCGGCCCGACCGGCTCCGGTAAGTCAACCTTGCTGGCGCTGATCGCGGCGCAGTTT
CGCCGTTACGCCGGCGCGCAGATCTTCGCTTTCGACAAGGGCCGCTCGATGATGCCGCTGACGCTCGCCGCCGGCGGCGA
CCATTACGAGATTGGCGGCGACGATGCGGACGGCTCAGCCGCACTCGCCTTTTGTCCCCTCTCCGATTTGTCGACGGACA
CCGATCGCGCCTGGGCCTCAGAATGGATCGAGACGCTCGTCGCCGTGCAGGGCGTGACGATCACGCCCGATCACCGCAAT
GCCATCTCGCGACAGATCGGGCTGATGGCCGAGGCGCGCGGGCGATCGCTGTCGGATTTTGTCTCGGGCGTGCAGATGCG
CGAGATCAAGGATGCGCTGCATCATTACACGGTCGACGGCCCCATGGGCCAATTGCTCGATGCGGAATCGGACGGGCTGG
AGCTCGGATCATTCCAGACCTTCGAGATCGAGCAGTTGATGAACATGGGCGAGCGCAACCTCGTCCCGGTTCTCACATAC
CTATTCCGCCGCATCGAAAAGCGGCTGACGGGCGCGCCGAGCCTGATCATTCTCGATGAGGCCTGGCTGATGCTCGGCCA
TCCGGTCTTCCGCGACAAGATTCGGGAATGGCTGAAGGTGCTGCGCAAAGCCAATTGCGCCGTGCTGCTCGCGACGCAGT
CGATCTCCGACGCCGAGCGCTCCGGCATCATCGACGTGCTGAAAGAAAGTTGCCCGACAAAAATTTGCCTGCCGAACGGC
GCCGCCCGGGAGCCCGGGACGCGCAAGTTCTACGAGCGCATCGGCTTCAACGATAGACAGATCGAGATTGTCGCGACCGC
AGTGCCCAAGCGCGAATACTACGTGGCTTCGCCCGAGGGCCGCCGTCTCTTCAACATGGCGCTCGGCCCAGTCGCGCTGT
CCTTCGTCGGCGCATCCGGCAAGGACGACTTGAAGCGCATTTTGGCGCTGAAGAAGGACAGCACCGATTGGCCCGTTTAC
TGGCTCAAGGAAAGGGGGATCGGCCATGCCGAGACGCTTCTCGCCGATTCATAG

Upstream 100 bases:

>100_bases
AGCCGACCCGATGATGCGGCGCGTCTATGCCCGGCACATCTCCTACCGGCCGAACTACCGGGCGACGTCGACGCCCTGGC
GGCGTTACTGAGATCCGCCG

Downstream 100 bases:

>100_bases
GGCGCTCATTGTCGCCTTCATCATCGGATTGCCGACGTCAGGTCCGGCCTTCGCCGGCGCTGCGGCCGGCGGCGCCACCG
AGTTCACGCAGATTCTCAAC

Product: conjugal transfer protein TrbE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 817; Mature: 817

Protein sequence:

>817_residues
MVALRSFRHPSPSFADLVPHAGLVANGIVLLKDGSLMAGWYFAGPDSESSTDAERNEVSRQINTILSRLGSGWMIQVEAV
RVPTTDYPARQDCHFPDPVTRAIDDERRARFEAERGHFESRHAIILTWRPPERRRAGLARYIYSDVESRSASYADTAIET
FQNAIREIEQYLASVLSIQRMETREVDERDGTRVARYDELFQFIRFCITGENHPVRLPDIPMYLDWLATAELQHGLSPMV
ENRFLGVVAIDGFPAESWPGILNSLDLMPLTYRWSSRFMFLDDQDARQKLERTRKKWQQKVRPFIDQLFQTQSRSIDQDA
AAMVAETEDAIAEASSQLVAYGYYTPVIVLFDDNSTRLQEKTEAVRRLIQAEGFGARIETLNATEAFLGSLPGNWYANIR
EPLINTRNLADLIPLNAVWSGSPTAPCPFYPPNSPPLMQVASGSTPFRMNLHVDDVGHTLVFGPTGSGKSTLLALIAAQF
RRYAGAQIFAFDKGRSMMPLTLAAGGDHYEIGGDDADGSAALAFCPLSDLSTDTDRAWASEWIETLVAVQGVTITPDHRN
AISRQIGLMAEARGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAESDGLELGSFQTFEIEQLMNMGERNLVPVLTY
LFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVLLATQSISDAERSGIIDVLKESCPTKICLPNG
AAREPGTRKFYERIGFNDRQIEIVATAVPKREYYVASPEGRRLFNMALGPVALSFVGASGKDDLKRILALKKDSTDWPVY
WLKERGIGHAETLLADS

Sequences:

>Translated_817_residues
MVALRSFRHPSPSFADLVPHAGLVANGIVLLKDGSLMAGWYFAGPDSESSTDAERNEVSRQINTILSRLGSGWMIQVEAV
RVPTTDYPARQDCHFPDPVTRAIDDERRARFEAERGHFESRHAIILTWRPPERRRAGLARYIYSDVESRSASYADTAIET
FQNAIREIEQYLASVLSIQRMETREVDERDGTRVARYDELFQFIRFCITGENHPVRLPDIPMYLDWLATAELQHGLSPMV
ENRFLGVVAIDGFPAESWPGILNSLDLMPLTYRWSSRFMFLDDQDARQKLERTRKKWQQKVRPFIDQLFQTQSRSIDQDA
AAMVAETEDAIAEASSQLVAYGYYTPVIVLFDDNSTRLQEKTEAVRRLIQAEGFGARIETLNATEAFLGSLPGNWYANIR
EPLINTRNLADLIPLNAVWSGSPTAPCPFYPPNSPPLMQVASGSTPFRMNLHVDDVGHTLVFGPTGSGKSTLLALIAAQF
RRYAGAQIFAFDKGRSMMPLTLAAGGDHYEIGGDDADGSAALAFCPLSDLSTDTDRAWASEWIETLVAVQGVTITPDHRN
AISRQIGLMAEARGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAESDGLELGSFQTFEIEQLMNMGERNLVPVLTY
LFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVLLATQSISDAERSGIIDVLKESCPTKICLPNG
AAREPGTRKFYERIGFNDRQIEIVATAVPKREYYVASPEGRRLFNMALGPVALSFVGASGKDDLKRILALKKDSTDWPVY
WLKERGIGHAETLLADS
>Mature_817_residues
MVALRSFRHPSPSFADLVPHAGLVANGIVLLKDGSLMAGWYFAGPDSESSTDAERNEVSRQINTILSRLGSGWMIQVEAV
RVPTTDYPARQDCHFPDPVTRAIDDERRARFEAERGHFESRHAIILTWRPPERRRAGLARYIYSDVESRSASYADTAIET
FQNAIREIEQYLASVLSIQRMETREVDERDGTRVARYDELFQFIRFCITGENHPVRLPDIPMYLDWLATAELQHGLSPMV
ENRFLGVVAIDGFPAESWPGILNSLDLMPLTYRWSSRFMFLDDQDARQKLERTRKKWQQKVRPFIDQLFQTQSRSIDQDA
AAMVAETEDAIAEASSQLVAYGYYTPVIVLFDDNSTRLQEKTEAVRRLIQAEGFGARIETLNATEAFLGSLPGNWYANIR
EPLINTRNLADLIPLNAVWSGSPTAPCPFYPPNSPPLMQVASGSTPFRMNLHVDDVGHTLVFGPTGSGKSTLLALIAAQF
RRYAGAQIFAFDKGRSMMPLTLAAGGDHYEIGGDDADGSAALAFCPLSDLSTDTDRAWASEWIETLVAVQGVTITPDHRN
AISRQIGLMAEARGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAESDGLELGSFQTFEIEQLMNMGERNLVPVLTY
LFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVLLATQSISDAERSGIIDVLKESCPTKICLPNG
AAREPGTRKFYERIGFNDRQIEIVATAVPKREYYVASPEGRRLFNMALGPVALSFVGASGKDDLKRILALKKDSTDWPVY
WLKERGIGHAETLLADS

Specific function: Unknown

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbE/virB4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004346
- InterPro:   IPR018145 [H]

Pfam domain/function: PF03135 CagE_TrbE_VirB [H]

EC number: NA

Molecular weight: Translated: 91400; Mature: 91400

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALRSFRHPSPSFADLVPHAGLVANGIVLLKDGSLMAGWYFAGPDSESSTDAERNEVSR
CCCCCCCCCCCCCHHHHCCCCCHHHCCEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHH
QINTILSRLGSGWMIQVEAVRVPTTDYPARQDCHFPDPVTRAIDDERRARFEAERGHFES
HHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCC
RHAIILTWRPPERRRAGLARYIYSDVESRSASYADTAIETFQNAIREIEQYLASVLSIQR
CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
METREVDERDGTRVARYDELFQFIRFCITGENHPVRLPDIPMYLDWLATAELQHGLSPMV
HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCHHH
ENRFLGVVAIDGFPAESWPGILNSLDLMPLTYRWSSRFMFLDDQDARQKLERTRKKWQQK
HCCEEEEEEECCCCCCCCCHHHCCCCCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHH
VRPFIDQLFQTQSRSIDQDAAAMVAETEDAIAEASSQLVAYGYYTPVIVLFDDNSTRLQE
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCHHHHH
KTEAVRRLIQAEGFGARIETLNATEAFLGSLPGNWYANIREPLINTRNLADLIPLNAVWS
HHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHCCCCEEEC
GSPTAPCPFYPPNSPPLMQVASGSTPFRMNLHVDDVGHTLVFGPTGSGKSTLLALIAAQF
CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHH
RRYAGAQIFAFDKGRSMMPLTLAAGGDHYEIGGDDADGSAALAFCPLSDLSTDTDRAWAS
HHHCCCEEEEECCCCCCCEEEEECCCCEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHH
EWIETLVAVQGVTITPDHRNAISRQIGLMAEARGRSLSDFVSGVQMREIKDALHHYTVDG
HHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHEECCC
PMGQLLDAESDGLELGSFQTFEIEQLMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDE
CHHHHHCCCCCCCCCCCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
AWLMLGHPVFRDKIREWLKVLRKANCAVLLATQSISDAERSGIIDVLKESCPTKICLPNG
HHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCHHHHHHHCCCCEEECCCC
AAREPGTRKFYERIGFNDRQIEIVATAVPKREYYVASPEGRRLFNMALGPVALSFVGASG
CCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCC
KDDLKRILALKKDSTDWPVYWLKERGIGHAETLLADS
HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHCCC
>Mature Secondary Structure
MVALRSFRHPSPSFADLVPHAGLVANGIVLLKDGSLMAGWYFAGPDSESSTDAERNEVSR
CCCCCCCCCCCCCHHHHCCCCCHHHCCEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHH
QINTILSRLGSGWMIQVEAVRVPTTDYPARQDCHFPDPVTRAIDDERRARFEAERGHFES
HHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCC
RHAIILTWRPPERRRAGLARYIYSDVESRSASYADTAIETFQNAIREIEQYLASVLSIQR
CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
METREVDERDGTRVARYDELFQFIRFCITGENHPVRLPDIPMYLDWLATAELQHGLSPMV
HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCHHH
ENRFLGVVAIDGFPAESWPGILNSLDLMPLTYRWSSRFMFLDDQDARQKLERTRKKWQQK
HCCEEEEEEECCCCCCCCCHHHCCCCCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHH
VRPFIDQLFQTQSRSIDQDAAAMVAETEDAIAEASSQLVAYGYYTPVIVLFDDNSTRLQE
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCHHHHH
KTEAVRRLIQAEGFGARIETLNATEAFLGSLPGNWYANIREPLINTRNLADLIPLNAVWS
HHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHCCCCEEEC
GSPTAPCPFYPPNSPPLMQVASGSTPFRMNLHVDDVGHTLVFGPTGSGKSTLLALIAAQF
CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHH
RRYAGAQIFAFDKGRSMMPLTLAAGGDHYEIGGDDADGSAALAFCPLSDLSTDTDRAWAS
HHHCCCEEEEECCCCCCCEEEEECCCCEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHH
EWIETLVAVQGVTITPDHRNAISRQIGLMAEARGRSLSDFVSGVQMREIKDALHHYTVDG
HHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHEECCC
PMGQLLDAESDGLELGSFQTFEIEQLMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDE
CHHHHHCCCCCCCCCCCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
AWLMLGHPVFRDKIREWLKVLRKANCAVLLATQSISDAERSGIIDVLKESCPTKICLPNG
HHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCHHHHHHHCCCCEEECCCC
AAREPGTRKFYERIGFNDRQIEIVATAVPKREYYVASPEGRRLFNMALGPVALSFVGASG
CCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCC
KDDLKRILALKKDSTDWPVYWLKERGIGHAETLLADS
HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]