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The map label for this gene is trbJ [H]

Identifier: 92109686

GI number: 92109686

Start: 20666

End: 21463

Strand: Reverse

Name: trbJ [H]

Synonym: Nham_4565

Alternate gene names: 92109686

Gene position: 21463-20666 (Counterclockwise)

Preceding gene: 92109687

Following gene: 92109685

Centisome position: 17.68

GC content: 62.91

Gene sequence:

>798_bases
ATGCCGAGACGCTTCTCGCCGATTCATAGGGCGCTCATTGTCGCCTTCATCATCGGATTGCCGACGTCAGGTCCGGCCTT
CGCCGGCGCTGCGGCCGGCGGCGCCACCGAGTTCACGCAGATTCTCAACAACGGCGAGTTGGTCAGCCTCGTCGGGCAGT
CGACGACGCAGATCAACAACCAGATTCAGCAGATCTCGCAGCTTGCCCAGCAGATTCAGAACCAGCTGAAGATCTACCAG
AACATGCTGCAGAACACCGCGCAGTTGCCCTCGCATGTCTGGGGCCAGGCCGAGGGTGATCTCAAACAGCTGCAAAGCGT
CGTCAACCAGGGGCAGGGCATCGCGTTTTCGATGGGCAATATCGACGACGTGCTCAAGCAGCGCTTCCAAAGCTACGCGC
AGTTCAAGACCAGCCTGCCGAACGGCGCGAACTTCGCGTCGACCTATCAGACCTGGTCGTCCACGAACCGCGACACGATC
GCCGGCACGCTCCAGGCCGCGGGTCTCACCTCGCAGCAATTTTCGACCGAGAACGCCACGATGGCGCAACTCAAGACCGC
CTCGGAGAGCGCCGACGGCCAGATGAAGGCCCTGCAGGTTGGCCATGAGATCGCCGCCCAGGAAGTCGCGCAGATGCAGA
AGTTGCGGGGACTGATCGCGCAGCAGACCACGATGATGGCGACCTGGTTCCAGTCCTCGCAGGCAGGCAAGGACCTGTCG
CAGGCGCGCCGCGAGCAGTTCTTCAACGCGACCGCACCGGTGACCTCCGGCGGCCAGACCATGGAACCGCGCTGGTGA

Upstream 100 bases:

>100_bases
GTCGGCGCATCCGGCAAGGACGACTTGAAGCGCATTTTGGCGCTGAAGAAGGACAGCACCGATTGGCCCGTTTACTGGCT
CAAGGAAAGGGGGATCGGCC

Downstream 100 bases:

>100_bases
AACCGTCGACGATCATCATCGTCATCATCGCGATCGGCGCCGGCGCCGCGGGCGCCTGGTGGTTGCTTGCGCCGCGGGCG
CCTGCGCCGACATCGGACGC

Product: conjugal transfer protein TrbJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MPRRFSPIHRALIVAFIIGLPTSGPAFAGAAAGGATEFTQILNNGELVSLVGQSTTQINNQIQQISQLAQQIQNQLKIYQ
NMLQNTAQLPSHVWGQAEGDLKQLQSVVNQGQGIAFSMGNIDDVLKQRFQSYAQFKTSLPNGANFASTYQTWSSTNRDTI
AGTLQAAGLTSQQFSTENATMAQLKTASESADGQMKALQVGHEIAAQEVAQMQKLRGLIAQQTTMMATWFQSSQAGKDLS
QARREQFFNATAPVTSGGQTMEPRW

Sequences:

>Translated_265_residues
MPRRFSPIHRALIVAFIIGLPTSGPAFAGAAAGGATEFTQILNNGELVSLVGQSTTQINNQIQQISQLAQQIQNQLKIYQ
NMLQNTAQLPSHVWGQAEGDLKQLQSVVNQGQGIAFSMGNIDDVLKQRFQSYAQFKTSLPNGANFASTYQTWSSTNRDTI
AGTLQAAGLTSQQFSTENATMAQLKTASESADGQMKALQVGHEIAAQEVAQMQKLRGLIAQQTTMMATWFQSSQAGKDLS
QARREQFFNATAPVTSGGQTMEPRW
>Mature_264_residues
PRRFSPIHRALIVAFIIGLPTSGPAFAGAAAGGATEFTQILNNGELVSLVGQSTTQINNQIQQISQLAQQIQNQLKIYQN
MLQNTAQLPSHVWGQAEGDLKQLQSVVNQGQGIAFSMGNIDDVLKQRFQSYAQFKTSLPNGANFASTYQTWSSTNRDTIA
GTLQAAGLTSQQFSTENATMAQLKTASESADGQMKALQVGHEIAAQEVAQMQKLRGLIAQQTTMMATWFQSSQAGKDLSQ
ARREQFFNATAPVTSGGQTMEPRW

Specific function: Unknown

COG id: COG5314

COG function: function code U; Conjugal transfer/entry exclusion protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014147 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28744; Mature: 28612

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRRFSPIHRALIVAFIIGLPTSGPAFAGAAAGGATEFTQILNNGELVSLVGQSTTQINN
CCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHCCCCEEEHHCCHHHHHHH
QIQQISQLAQQIQNQLKIYQNMLQNTAQLPSHVWGQAEGDLKQLQSVVNQGQGIAFSMGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCC
IDDVLKQRFQSYAQFKTSLPNGANFASTYQTWSSTNRDTIAGTLQAAGLTSQQFSTENAT
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCHH
MAQLKTASESADGQMKALQVGHEIAAQEVAQMQKLRGLIAQQTTMMATWFQSSQAGKDLS
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QARREQFFNATAPVTSGGQTMEPRW
HHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]