Click here to switch to the map view.

The map label for this gene is trbH [H]

Identifier: 92109681

GI number: 92109681

Start: 17300

End: 17752

Strand: Reverse

Name: trbH [H]

Synonym: Nham_4560

Alternate gene names: 92109681

Gene position: 17752-17300 (Counterclockwise)

Preceding gene: 92109682

Following gene: 92109680

Centisome position: 14.62

GC content: 66.89

Gene sequence:

>453_bases
ATGCGCGTGGACTCTTTGACCCGCCGAGCCATCCTTCTTTGCATCGTCGCCCTGTCGCTCGCGGGCTGCGCGTCATTCGG
AACCGGCGGCCTGGTGGCAAGCTCGGCACCGCCCGATCTGTCTGGCCCCGCCGCCTCCGCGATCGCCGGCGATCTGGTTA
CGAAGTTCGCGGAGCAGGTCGGACCCGGATCGGGGACGATCATCCTGAAGCGCGACGGCTCGCCGTTCGGCCAGGCGCTC
GAGACGTCGCTGAAGAGTTGGGGTTACGCGGTCGCGACCGATCAGAAGACCGGCGGCGAAAAGACTATTCCGCTCGCCTA
TGTCATCGCGTCCTACAACGGCCAAATCCTGGCGCGGCTATCGACCGCACACGTCGAGCTCGGACGCACCTATGCCGCAA
CAACCGCCGGCGCGTCGCCGGCCAGTCCGCTCTCCGTCATGCGGCGTGGATAG

Upstream 100 bases:

>100_bases
ACATGATGGTGGTCGATTATCAGATCGACACCGCCATTCTGGTCTCCGGCGTGAGCTTTTGGCATCAGGAGAAGGTGACG
ATCCGGAGGGGAGGCTGACC

Downstream 100 bases:

>100_bases
GGGACGGCTCATGGCGCAATCCCTGAAGCTCGGCGGCACACCGGAGGGCGAGGAGGCGAGAGGCATCCGACGCCTCAACC
AGCTGCCGATCATCGTCGCC

Product: conjugal transfer protein TrbH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MRVDSLTRRAILLCIVALSLAGCASFGTGGLVASSAPPDLSGPAASAIAGDLVTKFAEQVGPGSGTIILKRDGSPFGQAL
ETSLKSWGYAVATDQKTGGEKTIPLAYVIASYNGQILARLSTAHVELGRTYAATTAGASPASPLSVMRRG

Sequences:

>Translated_150_residues
MRVDSLTRRAILLCIVALSLAGCASFGTGGLVASSAPPDLSGPAASAIAGDLVTKFAEQVGPGSGTIILKRDGSPFGQAL
ETSLKSWGYAVATDQKTGGEKTIPLAYVIASYNGQILARLSTAHVELGRTYAATTAGASPASPLSVMRRG
>Mature_150_residues
MRVDSLTRRAILLCIVALSLAGCASFGTGGLVASSAPPDLSGPAASAIAGDLVTKFAEQVGPGSGTIILKRDGSPFGQAL
ETSLKSWGYAVATDQKTGGEKTIPLAYVIASYNGQILARLSTAHVELGRTYAATTAGASPASPLSVMRRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010837 [H]

Pfam domain/function: PF07283 TrbH [H]

EC number: NA

Molecular weight: Translated: 15167; Mature: 15167

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVDSLTRRAILLCIVALSLAGCASFGTGGLVASSAPPDLSGPAASAIAGDLVTKFAEQV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
GPGSGTIILKRDGSPFGQALETSLKSWGYAVATDQKTGGEKTIPLAYVIASYNGQILARL
CCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCHHEEEEECCCCEEEEEE
STAHVELGRTYAATTAGASPASPLSVMRRG
HHHHHHHCCEEEECCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MRVDSLTRRAILLCIVALSLAGCASFGTGGLVASSAPPDLSGPAASAIAGDLVTKFAEQV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
GPGSGTIILKRDGSPFGQALETSLKSWGYAVATDQKTGGEKTIPLAYVIASYNGQILARL
CCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCHHEEEEECCCCEEEEEE
STAHVELGRTYAATTAGASPASPLSVMRRG
HHHHHHHCCEEEECCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]