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The map label for this gene is traR [H]

Identifier: 92109679

GI number: 92109679

Start: 14844

End: 15548

Strand: Reverse

Name: traR [H]

Synonym: Nham_4558

Alternate gene names: 92109679

Gene position: 15548-14844 (Counterclockwise)

Preceding gene: 92109680

Following gene: 92109677

Centisome position: 12.81

GC content: 56.6

Gene sequence:

>705_bases
TTGGGTGGGCAGCTACAAGGGTTGATTGACGCCGTCGATGTGGCACAGGACGAGCGTTCTATACACAATGCGATCAAGAA
TTTTACTGTCGCGTCCGGCTTCGATCGCTACGCCTACATTCATGTCCATGCCGGTGATGGAGTTGGTTTCACAGATTATC
CCGTGGAGTGGCAGAATATCTATCTCGAGAAACGTTATACAGTCATCGATCCCGTCGTTACGACCGCCAAGCGCACCATG
AAGATGTTTGCCTGGTCGGCGGAGGATCCCACCGTGTGGAGGGGCTCGCGCGAGATCAAGCAATTCTATTCGGAGGCAAC
CGACTTCGGCATCCGCTCCGGCGTCTCCGTTCCGATCCGAACAAGCTATGGCCGCACCGCGATGATTACGCTTGCGTCAG
ATCGACGGCAGGTCGAGCTCCCACCTTGGGATCCGATGCAGGCGGCGCTGGCACTTGCATACATTCATATTCACCTCAGT
CTGGCGTCCGCGTCGTCACTGAAAGTAGGAGAGGTGAGCCTGTCGGCGCAGGAGGCGACCTCGCTCAGTTGGTCGTCACA
TGGCAAGTCCATGAACGTGATCGCTGACCTGCTGGGCATCAAGCCACGAACAGTCCAGTTCTACCTCGACAATGCACGAG
ACAAGCTCGGCGCCAGCAACCTTCAGCAGGCAGTCCGTATCGCCATGGAGAAGAAGCTGATCTAG

Upstream 100 bases:

>100_bases
ACGCAGCGGGCCATCGGCCTAGAAGACATCGATATCTCATCCGACTAGCGCTATCGCGATCGAAAGGCAATCGAAGGATA
AAAACTGGGAGGCACTTACA

Downstream 100 bases:

>100_bases
TTTAGCGTGCGCGCCATCAGCAGCACTCAGACTGACTTCGGCGCGCCCGAGCGGGACTCCAGTTGACGGATCGGGAGGTC
TAAAAAGCGTTACTTGGTAG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MGGQLQGLIDAVDVAQDERSIHNAIKNFTVASGFDRYAYIHVHAGDGVGFTDYPVEWQNIYLEKRYTVIDPVVTTAKRTM
KMFAWSAEDPTVWRGSREIKQFYSEATDFGIRSGVSVPIRTSYGRTAMITLASDRRQVELPPWDPMQAALALAYIHIHLS
LASASSLKVGEVSLSAQEATSLSWSSHGKSMNVIADLLGIKPRTVQFYLDNARDKLGASNLQQAVRIAMEKKLI

Sequences:

>Translated_234_residues
MGGQLQGLIDAVDVAQDERSIHNAIKNFTVASGFDRYAYIHVHAGDGVGFTDYPVEWQNIYLEKRYTVIDPVVTTAKRTM
KMFAWSAEDPTVWRGSREIKQFYSEATDFGIRSGVSVPIRTSYGRTAMITLASDRRQVELPPWDPMQAALALAYIHIHLS
LASASSLKVGEVSLSAQEATSLSWSSHGKSMNVIADLLGIKPRTVQFYLDNARDKLGASNLQQAVRIAMEKKLI
>Mature_233_residues
GGQLQGLIDAVDVAQDERSIHNAIKNFTVASGFDRYAYIHVHAGDGVGFTDYPVEWQNIYLEKRYTVIDPVVTTAKRTMK
MFAWSAEDPTVWRGSREIKQFYSEATDFGIRSGVSVPIRTSYGRTAMITLASDRRQVELPPWDPMQAALALAYIHIHLSL
ASASSLKVGEVSLSAQEATSLSWSSHGKSMNVIADLLGIKPRTVQFYLDNARDKLGASNLQQAVRIAMEKKLI

Specific function: Positive regulation of conjugal transfer. TraR activates target genes in the presence of AAI and also activates traR and traI themselves [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 25967; Mature: 25836

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGQLQGLIDAVDVAQDERSIHNAIKNFTVASGFDRYAYIHVHAGDGVGFTDYPVEWQNI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEECCCCCCCCCCCCHHHEE
YLEKRYTVIDPVVTTAKRTMKMFAWSAEDPTVWRGSREIKQFYSEATDFGIRSGVSVPIR
EEECCCEEEHHHHHHHHHHHHHHEECCCCCCEECCCHHHHHHHHHHHCCHHHCCCCCEEE
TSYGRTAMITLASDRRQVELPPWDPMQAALALAYIHIHLSLASASSLKVGEVSLSAQEAT
ECCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHEEEEECCCCCEEEEEEEECHHHHH
SLSWSSHGKSMNVIADLLGIKPRTVQFYLDNARDKLGASNLQQAVRIAMEKKLI
CCCHHHCCCHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GGQLQGLIDAVDVAQDERSIHNAIKNFTVASGFDRYAYIHVHAGDGVGFTDYPVEWQNI
CCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEECCCCCCCCCCCCHHHEE
YLEKRYTVIDPVVTTAKRTMKMFAWSAEDPTVWRGSREIKQFYSEATDFGIRSGVSVPIR
EEECCCEEEHHHHHHHHHHHHHHEECCCCCCEECCCHHHHHHHHHHHCCHHHCCCCCEEE
TSYGRTAMITLASDRRQVELPPWDPMQAALALAYIHIHLSLASASSLKVGEVSLSAQEAT
ECCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHEEEEECCCCCEEEEEEEECHHHHH
SLSWSSHGKSMNVIADLLGIKPRTVQFYLDNARDKLGASNLQQAVRIAMEKKLI
CCCHHHCCCHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]