| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790502
Identifier: 91790502
GI number: 91790502
Start: 4961213
End: 4962895
Strand: Reverse
Name: 91790502
Synonym: Bpro_4673
Alternate gene names: NA
Gene position: 4962895-4961213 (Counterclockwise)
Preceding gene: 91790503
Following gene: 91790501
Centisome position: 95.44
GC content: 55.79
Gene sequence:
>1683_bases ATGACAGCTTCACGTTTCCATGCCTTCGGGGTTCTTTGTCTTGCGTGGGCCTGGCTGGCGTATGACCATTACCGTCCCTG GGTGAACTTTCATTCAGAGGCGCTGGCGCTGCTAGGCATAGGCTTGCTGGTGGCCAGCCGCTGCCTGGTTCGCAGTTGCC TGGACGCCGAAGCAGCGCCTCGCATAGTTTGGTGGGTAATGGCCGCAGGGCTCCTGCCATGGCTTCAATATGCAATGGGC ATCAGCTTGTTTGCAGGGGATGCGCTTCTCGCATCGCTGTACCTCAGCGGTCTCGGCGCAGCTATTTGGCTCGGTTACAG CTATGTAGTGGCTCCGCCTGAAAAGGATGCAGCATTAACCTCAGTGTTTTATATGCTCTGGTTTGCCGCCCTGGTATCGG CGGCAATAGGCTTGCTGCAGTGGCTGAATTTGCAGGGTCCTCTGGCCATGTACGTGGTGCAAACCGACGCCGGTGACCGT GCCATGGGCAACTTGGGCCAGCCTAATCAATTGGCGACTTTGCTGCTGATGGGCATGGCTGCCTTGGCATGGACTTTTGA GCGCAAGCGCATCGGGCGTTTGGGGCTGATCGTTGGCATCGCTTTTATGTCGGTGGCTCTGGTCCTTGCCCAGTCGCGCG CGGGAATGTTGAGCGCGCTTGTGGGGGCAATTTTTCTGATCTGGAAGAACAACGCAGCGCCAGAACGGATAGCGCCAAGG TATGTGTTTGCCTGGCTGCTGGCGTATGGCGCTGCGGTGCAAATGCTTCCATATTTCCAGGATTTTCTGCTGATGGGAGG CGGTCGCAGTATGAATCTGGGGGTTGATAGCGCGCGTGTCACTATTTGGAAGCAGATGCTTAGCGGCATAGGCCAGTCTC CATGGCTGGGCTATGGATGGAACCAGACTCCCACCGCCCACGCAGCTGGCAGTTTGGCGGTACCCGGTTCCATGACATAT ACCAATGCACACAACATCGTGCTGGATATTCTGGCATGGAATGGGGTGCCGCTGGGCTTGGTGTTGACTGCGGCATGCGC CTACTGGTTTGTGTCGCGCATGCACGGTGCAATGCGGTCCAGTGCGATTTACGCAATGGCTTGCTTGTTGCCTATTGCTG TACACAGCATGGTGGAATATCCGTTTGCCTATTCTTACTTTCTGCTCACCGCGGGGCTGATGGTGGGCATAGTCGAGGCA TCCCATCGCGGGATTCATACCATCAGGCTCAACCTGCGTTGGGTTGGTTGTGCATTGGCTGTCTGGTTTGTGCTTGGCAG TTACATGGTTTATGAATACCTATTAATCGAGGAAGACTTTCGCGTAGTCCGTTTCGAAAATTTGCGCATAGGTCAGACTC CGGCGGAATACAAGGTGCCAGATGTCTGGGTTTTTTCGCATATGGCGTCCATGCTAAAGGCGGGACGCCAGCAGGCGCTG CCCGGCATGAAACCGGACGATCTGGAGAATCTTCGCAAGGCATCGTTGCGCTTTCCCTATGGTAGCCTTGGCTTGCGTTA TGCCCTGGCATTAGGGCTCAACGGGGATCCGGCGGGTGCGACTCGCCAGATGGCGGTTGTTCGTGGCATGTACGGTGAAT ATTATTACCAGGCCGCAGTGAGCGTATTGCGAGCGGTACAGCAAGAAAAATATCCGGAACTTTCCAAGGTAGTGACACCC TGA
Upstream 100 bases:
>100_bases GCAGCGTCTGGTGGTGTTAATCCCAAGTTCTTGCCTGGTTCTTGCCGCACCGGCCAATAAGCTCGGATGATTCAAAAAGC GGCTCCGGCCGCTTTTTTTT
Downstream 100 bases:
>100_bases GCGTGCATCCCGGTAATTGGAGTCCGACTCAAATTTTCGTTCGCTCAGTGTGGCTTACACCACAATGAACAGACCCAAAT GGCTATAAGGGGCTTGGTCC
Product: O-antigen polymerase
Products: NA
Alternate protein names: Lipid A Core; O-Antigen Polymerase Family Protein; O-Antigen Ligase; O-Antigen Polymerase Family
Number of amino acids: Translated: 560; Mature: 559
Protein sequence:
>560_residues MTASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAPRIVWWVMAAGLLPWLQYAMG ISLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALTSVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDR AMGNLGQPNQLATLLLMGMAALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPR YVFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGWNQTPTAHAAGSLAVPGSMTY TNAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRSSAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEA SHRGIHTIRLNLRWVGCALAVWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQAL PGMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAVSVLRAVQQEKYPELSKVVTP
Sequences:
>Translated_560_residues MTASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAPRIVWWVMAAGLLPWLQYAMG ISLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALTSVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDR AMGNLGQPNQLATLLLMGMAALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPR YVFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGWNQTPTAHAAGSLAVPGSMTY TNAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRSSAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEA SHRGIHTIRLNLRWVGCALAVWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQAL PGMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAVSVLRAVQQEKYPELSKVVTP >Mature_559_residues TASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAPRIVWWVMAAGLLPWLQYAMGI SLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALTSVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDRA MGNLGQPNQLATLLLMGMAALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPRY VFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGWNQTPTAHAAGSLAVPGSMTYT NAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRSSAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEAS HRGIHTIRLNLRWVGCALAVWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQALP GMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAVSVLRAVQQEKYPELSKVVTP
Specific function: Unknown
COG id: COG3307
COG function: function code M; Lipid A core - O-antigen ligase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61490; Mature: 61359
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAP CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH RIVWWVMAAGLLPWLQYAMGISLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHH SVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDRAMGNLGQPNQLATLLLMGMA HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCHHHHHHHHHHHH ALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHH YVFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC NQTPTAHAAGSLAVPGSMTYTNAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRS CCCCCCCCCCCEECCCCCEEECCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH SAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEASHRGIHTIRLNLRWVGCALA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH VWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQAL HHHHHHHHHHHHHHHHHCCCCEEEEECEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC PGMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAV CCCCCHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH SVLRAVQQEKYPELSKVVTP HHHHHHHHHCCCCHHHCCCC >Mature Secondary Structure TASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAP CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH RIVWWVMAAGLLPWLQYAMGISLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHH SVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDRAMGNLGQPNQLATLLLMGMA HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCHHHHHHHHHHHH ALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHH YVFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC NQTPTAHAAGSLAVPGSMTYTNAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRS CCCCCCCCCCCEECCCCCEEECCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH SAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEASHRGIHTIRLNLRWVGCALA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH VWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQAL HHHHHHHHHHHHHHHHHCCCCEEEEECEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC PGMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAV CCCCCHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH SVLRAVQQEKYPELSKVVTP HHHHHHHHHCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA