Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91790502

Identifier: 91790502

GI number: 91790502

Start: 4961213

End: 4962895

Strand: Reverse

Name: 91790502

Synonym: Bpro_4673

Alternate gene names: NA

Gene position: 4962895-4961213 (Counterclockwise)

Preceding gene: 91790503

Following gene: 91790501

Centisome position: 95.44

GC content: 55.79

Gene sequence:

>1683_bases
ATGACAGCTTCACGTTTCCATGCCTTCGGGGTTCTTTGTCTTGCGTGGGCCTGGCTGGCGTATGACCATTACCGTCCCTG
GGTGAACTTTCATTCAGAGGCGCTGGCGCTGCTAGGCATAGGCTTGCTGGTGGCCAGCCGCTGCCTGGTTCGCAGTTGCC
TGGACGCCGAAGCAGCGCCTCGCATAGTTTGGTGGGTAATGGCCGCAGGGCTCCTGCCATGGCTTCAATATGCAATGGGC
ATCAGCTTGTTTGCAGGGGATGCGCTTCTCGCATCGCTGTACCTCAGCGGTCTCGGCGCAGCTATTTGGCTCGGTTACAG
CTATGTAGTGGCTCCGCCTGAAAAGGATGCAGCATTAACCTCAGTGTTTTATATGCTCTGGTTTGCCGCCCTGGTATCGG
CGGCAATAGGCTTGCTGCAGTGGCTGAATTTGCAGGGTCCTCTGGCCATGTACGTGGTGCAAACCGACGCCGGTGACCGT
GCCATGGGCAACTTGGGCCAGCCTAATCAATTGGCGACTTTGCTGCTGATGGGCATGGCTGCCTTGGCATGGACTTTTGA
GCGCAAGCGCATCGGGCGTTTGGGGCTGATCGTTGGCATCGCTTTTATGTCGGTGGCTCTGGTCCTTGCCCAGTCGCGCG
CGGGAATGTTGAGCGCGCTTGTGGGGGCAATTTTTCTGATCTGGAAGAACAACGCAGCGCCAGAACGGATAGCGCCAAGG
TATGTGTTTGCCTGGCTGCTGGCGTATGGCGCTGCGGTGCAAATGCTTCCATATTTCCAGGATTTTCTGCTGATGGGAGG
CGGTCGCAGTATGAATCTGGGGGTTGATAGCGCGCGTGTCACTATTTGGAAGCAGATGCTTAGCGGCATAGGCCAGTCTC
CATGGCTGGGCTATGGATGGAACCAGACTCCCACCGCCCACGCAGCTGGCAGTTTGGCGGTACCCGGTTCCATGACATAT
ACCAATGCACACAACATCGTGCTGGATATTCTGGCATGGAATGGGGTGCCGCTGGGCTTGGTGTTGACTGCGGCATGCGC
CTACTGGTTTGTGTCGCGCATGCACGGTGCAATGCGGTCCAGTGCGATTTACGCAATGGCTTGCTTGTTGCCTATTGCTG
TACACAGCATGGTGGAATATCCGTTTGCCTATTCTTACTTTCTGCTCACCGCGGGGCTGATGGTGGGCATAGTCGAGGCA
TCCCATCGCGGGATTCATACCATCAGGCTCAACCTGCGTTGGGTTGGTTGTGCATTGGCTGTCTGGTTTGTGCTTGGCAG
TTACATGGTTTATGAATACCTATTAATCGAGGAAGACTTTCGCGTAGTCCGTTTCGAAAATTTGCGCATAGGTCAGACTC
CGGCGGAATACAAGGTGCCAGATGTCTGGGTTTTTTCGCATATGGCGTCCATGCTAAAGGCGGGACGCCAGCAGGCGCTG
CCCGGCATGAAACCGGACGATCTGGAGAATCTTCGCAAGGCATCGTTGCGCTTTCCCTATGGTAGCCTTGGCTTGCGTTA
TGCCCTGGCATTAGGGCTCAACGGGGATCCGGCGGGTGCGACTCGCCAGATGGCGGTTGTTCGTGGCATGTACGGTGAAT
ATTATTACCAGGCCGCAGTGAGCGTATTGCGAGCGGTACAGCAAGAAAAATATCCGGAACTTTCCAAGGTAGTGACACCC
TGA

Upstream 100 bases:

>100_bases
GCAGCGTCTGGTGGTGTTAATCCCAAGTTCTTGCCTGGTTCTTGCCGCACCGGCCAATAAGCTCGGATGATTCAAAAAGC
GGCTCCGGCCGCTTTTTTTT

Downstream 100 bases:

>100_bases
GCGTGCATCCCGGTAATTGGAGTCCGACTCAAATTTTCGTTCGCTCAGTGTGGCTTACACCACAATGAACAGACCCAAAT
GGCTATAAGGGGCTTGGTCC

Product: O-antigen polymerase

Products: NA

Alternate protein names: Lipid A Core; O-Antigen Polymerase Family Protein; O-Antigen Ligase; O-Antigen Polymerase Family

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MTASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAPRIVWWVMAAGLLPWLQYAMG
ISLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALTSVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDR
AMGNLGQPNQLATLLLMGMAALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPR
YVFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGWNQTPTAHAAGSLAVPGSMTY
TNAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRSSAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEA
SHRGIHTIRLNLRWVGCALAVWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQAL
PGMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAVSVLRAVQQEKYPELSKVVTP

Sequences:

>Translated_560_residues
MTASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAPRIVWWVMAAGLLPWLQYAMG
ISLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALTSVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDR
AMGNLGQPNQLATLLLMGMAALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPR
YVFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGWNQTPTAHAAGSLAVPGSMTY
TNAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRSSAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEA
SHRGIHTIRLNLRWVGCALAVWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQAL
PGMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAVSVLRAVQQEKYPELSKVVTP
>Mature_559_residues
TASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAPRIVWWVMAAGLLPWLQYAMGI
SLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALTSVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDRA
MGNLGQPNQLATLLLMGMAALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPRY
VFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGWNQTPTAHAAGSLAVPGSMTYT
NAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRSSAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEAS
HRGIHTIRLNLRWVGCALAVWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQALP
GMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAVSVLRAVQQEKYPELSKVVTP

Specific function: Unknown

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61490; Mature: 61359

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAP
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
RIVWWVMAAGLLPWLQYAMGISLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHH
SVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDRAMGNLGQPNQLATLLLMGMA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCHHHHHHHHHHHH
ALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHH
YVFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
NQTPTAHAAGSLAVPGSMTYTNAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRS
CCCCCCCCCCCEECCCCCEEECCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEASHRGIHTIRLNLRWVGCALA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
VWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQAL
HHHHHHHHHHHHHHHHHCCCCEEEEECEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PGMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAV
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SVLRAVQQEKYPELSKVVTP
HHHHHHHHHCCCCHHHCCCC
>Mature Secondary Structure 
TASRFHAFGVLCLAWAWLAYDHYRPWVNFHSEALALLGIGLLVASRCLVRSCLDAEAAP
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
RIVWWVMAAGLLPWLQYAMGISLFAGDALLASLYLSGLGAAIWLGYSYVVAPPEKDAALT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHH
SVFYMLWFAALVSAAIGLLQWLNLQGPLAMYVVQTDAGDRAMGNLGQPNQLATLLLMGMA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCHHHHHHHHHHHH
ALAWTFERKRIGRLGLIVGIAFMSVALVLAQSRAGMLSALVGAIFLIWKNNAAPERIAPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHH
YVFAWLLAYGAAVQMLPYFQDFLLMGGGRSMNLGVDSARVTIWKQMLSGIGQSPWLGYGW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
NQTPTAHAAGSLAVPGSMTYTNAHNIVLDILAWNGVPLGLVLTAACAYWFVSRMHGAMRS
CCCCCCCCCCCEECCCCCEEECCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SAIYAMACLLPIAVHSMVEYPFAYSYFLLTAGLMVGIVEASHRGIHTIRLNLRWVGCALA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
VWFVLGSYMVYEYLLIEEDFRVVRFENLRIGQTPAEYKVPDVWVFSHMASMLKAGRQQAL
HHHHHHHHHHHHHHHHHCCCCEEEEECEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PGMKPDDLENLRKASLRFPYGSLGLRYALALGLNGDPAGATRQMAVVRGMYGEYYYQAAV
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SVLRAVQQEKYPELSKVVTP
HHHHHHHHHCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA