| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790448
Identifier: 91790448
GI number: 91790448
Start: 4900800
End: 4901582
Strand: Reverse
Name: 91790448
Synonym: Bpro_4619
Alternate gene names: NA
Gene position: 4901582-4900800 (Counterclockwise)
Preceding gene: 91790449
Following gene: 91790446
Centisome position: 94.26
GC content: 72.41
Gene sequence:
>783_bases ATGAGCCTGACCCTCGACAAACGCCAGCGCGCCATGCTGCGCGAAATGGGGGTGCGGGTCTGGCTGCCGCAAGCGCCAGA CCGGCCCGTAACGGTGCAAGCCGAGGTCGAATCTGCCATGGATGCGGTAGTCCCTGGTGCCGGGTTGGCGGGGGCTGCGG TTCATTTCCCTGAAAACAGGCCGGTTGCGGTGCGAGAGCGCCCCGTGCCTGCGCAAGCACCCCAAGCGCCCTCAGCGCCC CGGGCCGAGGCGCAGCCGGGCGGCGGGCCGGTGGGCTGGCGCGTCGGCGCCGCGCAGGCGCTGTACGCGGAAGGAGCCCA GGCGCATGGCGCACGCTGGCTGGTGCTCGCCGAAACGCCAGCCGCGGCCCTGCAGGCCGAGCCCTTCAGCCCCTTCCTCG GCGATGCTGGCAAGCTGCTCGACAACATGCTGCGCGCGGCCCGCTTGAACCAGGCCGGCGTCGTGTTGCTGGCGCCGCTG GTCCGGCTGGCGGCCTCCGGCTCGGCGGCGGCCGGCCTGCAGGCGGCGCTGGCGGATCTGGCTGCCCATGCGCTGCCCGA CGTGGTGCTGGTGATGGGCCGCCTGGCGGCGCAGGCGGTGTTGCAGTCCACCGAGCCCCTGGGCCGGCTCCGGGGCCAGG TACACAGCGTGCTCGGTGCGAACACCGTCGTGACCTACGACGCCACCTACCTGCTGCGCAACCCGGCCGACAAAGCCAAG GCCTGGGAAGACCTGTGCCTGGCCATGCGCCTGGCCCGCAGTTCGGCATCCCCTGACAACTGA
Upstream 100 bases:
>100_bases TCGGCACGCGTCGCAACTACTACCCGGCCGGCGCGGCGCGGCGCGAAGACGCCATTGTCATGAGTCTGGCGCTGTGAGTC CTCATGGTGAAAGCCCTCCA
Downstream 100 bases:
>100_bases TTTCTCAGCCTGCTTTTTCGGCTTCGGACGAGCGGCCGGGTACCAGCACCGACGCGATGGCGACCACCATCAAGACCACG GCAGTCCAATCCTGCCAGTG
Product: phage SPO1 DNA polymerase-like protein
Products: diphosphate; DNAn+1
Alternate protein names: Phage SPO1 DNA Polymerase Domain-Containing Protein; Uracil-DNA Glycosylase Phage-Related Protein; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase-Related Protein; Phage DNA Polymerase; Uracil-DNA Glycosylase Superfamily; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein; Bacteriophage-Type DNA Polymerase
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MSLTLDKRQRAMLREMGVRVWLPQAPDRPVTVQAEVESAMDAVVPGAGLAGAAVHFPENRPVAVRERPVPAQAPQAPSAP RAEAQPGGGPVGWRVGAAQALYAEGAQAHGARWLVLAETPAAALQAEPFSPFLGDAGKLLDNMLRAARLNQAGVVLLAPL VRLAASGSAAAGLQAALADLAAHALPDVVLVMGRLAAQAVLQSTEPLGRLRGQVHSVLGANTVVTYDATYLLRNPADKAK AWEDLCLAMRLARSSASPDN
Sequences:
>Translated_260_residues MSLTLDKRQRAMLREMGVRVWLPQAPDRPVTVQAEVESAMDAVVPGAGLAGAAVHFPENRPVAVRERPVPAQAPQAPSAP RAEAQPGGGPVGWRVGAAQALYAEGAQAHGARWLVLAETPAAALQAEPFSPFLGDAGKLLDNMLRAARLNQAGVVLLAPL VRLAASGSAAAGLQAALADLAAHALPDVVLVMGRLAAQAVLQSTEPLGRLRGQVHSVLGANTVVTYDATYLLRNPADKAK AWEDLCLAMRLARSSASPDN >Mature_259_residues SLTLDKRQRAMLREMGVRVWLPQAPDRPVTVQAEVESAMDAVVPGAGLAGAAVHFPENRPVAVRERPVPAQAPQAPSAPR AEAQPGGGPVGWRVGAAQALYAEGAQAHGARWLVLAETPAAALQAEPFSPFLGDAGKLLDNMLRAARLNQAGVVLLAPLV RLAASGSAAAGLQAALADLAAHALPDVVLVMGRLAAQAVLQSTEPLGRLRGQVHSVLGANTVVTYDATYLLRNPADKAKA WEDLCLAMRLARSSASPDN
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 27033; Mature: 26902
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTLDKRQRAMLREMGVRVWLPQAPDRPVTVQAEVESAMDAVVPGAGLAGAAVHFPENR CCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEECCCCC PVAVRERPVPAQAPQAPSAPRAEAQPGGGPVGWRVGAAQALYAEGAQAHGARWLVLAETP CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCC AAALQAEPFSPFLGDAGKLLDNMLRAARLNQAGVVLLAPLVRLAASGSAAAGLQAALADL HHHHCCCCCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH AAHALPDVVLVMGRLAAQAVLQSTEPLGRLRGQVHSVLGANTVVTYDATYLLRNPADKAK HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECHHEEECCCHHHHH AWEDLCLAMRLARSSASPDN HHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SLTLDKRQRAMLREMGVRVWLPQAPDRPVTVQAEVESAMDAVVPGAGLAGAAVHFPENR CCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEECCCCC PVAVRERPVPAQAPQAPSAPRAEAQPGGGPVGWRVGAAQALYAEGAQAHGARWLVLAETP CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCC AAALQAEPFSPFLGDAGKLLDNMLRAARLNQAGVVLLAPLVRLAASGSAAAGLQAALADL HHHHCCCCCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH AAHALPDVVLVMGRLAAQAVLQSTEPLGRLRGQVHSVLGANTVVTYDATYLLRNPADKAK HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECHHEEECCCHHHHH AWEDLCLAMRLARSSASPDN HHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA