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The map label for this gene is ykfC [H]

Identifier: 91790446

GI number: 91790446

Start: 4896911

End: 4898668

Strand: Reverse

Name: ykfC [H]

Synonym: Bpro_4617

Alternate gene names: 91790446

Gene position: 4898668-4896911 (Counterclockwise)

Preceding gene: 91790448

Following gene: 91790445

Centisome position: 94.2

GC content: 54.38

Gene sequence:

>1758_bases
ATGGAACACATCGGCAACGATGCTGCGTCTCCAGACGGACCAAGTGAATGGCATTCGATTGATTGGAAGCTAGTCATGGA
GTTCGTCGGGAAGGCGCAGATGCGCATAGCGCAGGCAGAACAGGAGAAGGGCTTCCGACGAGTTGCAAGACTCACACGAA
GTCTCATCCGATCCTGGCAAGCCAAGGCATTGGCAGTCAGGCGAGTAACGGAGAACCAAGGGAAGCGAACGAGTGGCGTC
GATTGCGTACTTTGGGACACGCCAACAAAGAAATGGAATGCGATCAGTTGTCTGAACCCTAAAGGGTATCGGGCTCGCCC
CCTAAGGCGGGCCTATATCCCGAAGGCCGACGGAAAGGAACGCCCCCTGGGCATGCCGACTATGAAGGACCGAGCGATGC
AAGCACTTTATCTGCTTGCGCTGGAACCGGCTGTGGAATGTGCGTCCGATCCGAACTCGTATGGGTTCCGGAAAGGACGA
TCCACACATGACGCGCGGTCTCAGTTGTTTGTATGCTTATCCAAAAAGGCTTCGGCCCAATGGGTATTGGATGCGGACAT
CGCGGGGTTCTTTGACAACATCAACCATGAGTGGTTGCTGAACCACGTCCACATGGACAAGGTGATGCTGCGCAAGTGGT
TGAAATCTGGAGTCGTTGACGCGGGTCAGCTCCAGCGCACGGATGACGGTACGCCGCAGGGCGGCGTCATCTCGCCGGCA
TTAGCGAATATCACCCTGAATGGTCTGGAAACGGGGCTCATGCAATTCCTCCGGGAAAAGCTGGGCGTCAATCAGGCAGG
AAAGGTGAAGGTGAACTTGGTAAGGTACGCAGATGACTTCGTGGTGACGGGTAGTTCAAAAGACTTCCTTGAGACCACTG
TCCGACCTTGGATTGTTGAATTCTTGCGCGAGCGGGGGTTGACACTGTCCACGGAAAAGACGCGCATTGTGCACATTGAC
CAAGGTTTTGACTTCCTAGGGTGGAACTTCCGTAAATACGGAGGGAAACTACTCATCAAGCCGAGTCAGAAGAACGTGAA
AGCGTTCTACGCCAAGGTGAAGGAGGAAATCGCTGGGTCGCTATCGAAGGTTCCAGTAGAAACGTTGATAAAGCGCCTGA
ACCCAATCCTCAAAGGTTGGGCTCAGTACCACAAGGGCACGGTTGCCAAGCAGATTTTCAGCAAAGTGGATTCTCTGATT
TATTGGAGACTGATGCGCTGGGGTATGCGGACGCACCCGCGCAAGACGGCGGGCTGGGTGTACGGACATTACTGGAAACA
GTGTGGCTCACGCAAACAGTTCGCGGGCTTGCAGGATGACCCCTCCGGAGGTGATGAAAGGATACCGCTGCCGCTGTATC
GCCTGTCGGACATGAAAATTGTCCGGCACATCAAGGTCAAGGGGGATTACAACCCCTTCCACCCGGATTGGGTCGCCGAT
GGAGAGAAACTACGAGTACGAAGGATGGGTGAAACCATTTGGAGCGCTCAGAGGGCCTCTCTGTGGTTCGACCAAGGTGG
TAAATGCGCTCTCTGTCAGCAAGAAATCGACATGGCTGAGGAAAACATGGACGACCACCATATCGTCTATCGGCAGCTAG
GAGGGAGTGATGCTCTTTCCAATCGGGTGCTGTTACATCCGATCTGTCACAGGCGTGTCCACGCCCTAGGTTTGAAGGTT
ATCAAGCCGGTCCCCGGTACGGGGGACTTTAATCTGGCGAAGCAGTCGAAGGTTATGCAACCTGTTGAAGCTGTGTAG

Upstream 100 bases:

>100_bases
GCGACAGCGTAAAGCCGTTGCGACTTATCAATGACCCAGAGGGTATCTGACCCTCTGGGTCAGTGCCATCTTCAATGGGT
CAAACCAAACTGGAGAAGGT

Downstream 100 bases:

>100_bases
TCAGTGGTCGTACGTGAGCCGTGTGCGGTGAAAGTCGCAAGCTCGGTTCGATGGGGGGGATATCATCGAGAGATGGTATC
CCTACCCTCCAATAAGCCCA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MEHIGNDAASPDGPSEWHSIDWKLVMEFVGKAQMRIAQAEQEKGFRRVARLTRSLIRSWQAKALAVRRVTENQGKRTSGV
DCVLWDTPTKKWNAISCLNPKGYRARPLRRAYIPKADGKERPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVCLSKKASAQWVLDADIAGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
LANITLNGLETGLMQFLREKLGVNQAGKVKVNLVRYADDFVVTGSSKDFLETTVRPWIVEFLRERGLTLSTEKTRIVHID
QGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKEEIAGSLSKVPVETLIKRLNPILKGWAQYHKGTVAKQIFSKVDSLI
YWRLMRWGMRTHPRKTAGWVYGHYWKQCGSRKQFAGLQDDPSGGDERIPLPLYRLSDMKIVRHIKVKGDYNPFHPDWVAD
GEKLRVRRMGETIWSAQRASLWFDQGGKCALCQQEIDMAEENMDDHHIVYRQLGGSDALSNRVLLHPICHRRVHALGLKV
IKPVPGTGDFNLAKQSKVMQPVEAV

Sequences:

>Translated_585_residues
MEHIGNDAASPDGPSEWHSIDWKLVMEFVGKAQMRIAQAEQEKGFRRVARLTRSLIRSWQAKALAVRRVTENQGKRTSGV
DCVLWDTPTKKWNAISCLNPKGYRARPLRRAYIPKADGKERPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVCLSKKASAQWVLDADIAGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
LANITLNGLETGLMQFLREKLGVNQAGKVKVNLVRYADDFVVTGSSKDFLETTVRPWIVEFLRERGLTLSTEKTRIVHID
QGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKEEIAGSLSKVPVETLIKRLNPILKGWAQYHKGTVAKQIFSKVDSLI
YWRLMRWGMRTHPRKTAGWVYGHYWKQCGSRKQFAGLQDDPSGGDERIPLPLYRLSDMKIVRHIKVKGDYNPFHPDWVAD
GEKLRVRRMGETIWSAQRASLWFDQGGKCALCQQEIDMAEENMDDHHIVYRQLGGSDALSNRVLLHPICHRRVHALGLKV
IKPVPGTGDFNLAKQSKVMQPVEAV
>Mature_585_residues
MEHIGNDAASPDGPSEWHSIDWKLVMEFVGKAQMRIAQAEQEKGFRRVARLTRSLIRSWQAKALAVRRVTENQGKRTSGV
DCVLWDTPTKKWNAISCLNPKGYRARPLRRAYIPKADGKERPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVCLSKKASAQWVLDADIAGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
LANITLNGLETGLMQFLREKLGVNQAGKVKVNLVRYADDFVVTGSSKDFLETTVRPWIVEFLRERGLTLSTEKTRIVHID
QGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKEEIAGSLSKVPVETLIKRLNPILKGWAQYHKGTVAKQIFSKVDSLI
YWRLMRWGMRTHPRKTAGWVYGHYWKQCGSRKQFAGLQDDPSGGDERIPLPLYRLSDMKIVRHIKVKGDYNPFHPDWVAD
GEKLRVRRMGETIWSAQRASLWFDQGGKCALCQQEIDMAEENMDDHHIVYRQLGGSDALSNRVLLHPICHRRVHALGLKV
IKPVPGTGDFNLAKQSKVMQPVEAV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=326, Percent_Identity=26.9938650306748, Blast_Score=91, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6226520, Length=333, Percent_Identity=24.3243243243243, Blast_Score=80, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 66404; Mature: 66404

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHIGNDAASPDGPSEWHSIDWKLVMEFVGKAQMRIAQAEQEKGFRRVARLTRSLIRSWQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKALAVRRVTENQGKRTSGVDCVLWDTPTKKWNAISCLNPKGYRARPLRRAYIPKADGKE
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCC
RPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGRSTHDARSQLFVCLSKKASAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEHHCCCCCCCC
WVLDADIAGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
EEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
LANITLNGLETGLMQFLREKLGVNQAGKVKVNLVRYADDFVVTGSSKDFLETTVRPWIVE
HHHEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEECCCHHHHHHHHHHHHHH
FLRERGLTLSTEKTRIVHIDQGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKEEIAGS
HHHHCCCEEECCCEEEEEEECCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHH
LSKVPVETLIKRLNPILKGWAQYHKGTVAKQIFSKVDSLIYWRLMRWGMRTHPRKTAGWV
HHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHH
YGHYWKQCGSRKQFAGLQDDPSGGDERIPLPLYRLSDMKIVRHIKVKGDYNPFHPDWVAD
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEECCCCCCCCCCCCC
GEKLRVRRMGETIWSAQRASLWFDQGGKCALCQQEIDMAEENMDDHHIVYRQLGGSDALS
CHHHHHHHHHHHHHHHHHHHEEECCCCCEEECHHHHHHHHHCCCCHHHHHHHCCCCHHHC
NRVLLHPICHRRVHALGLKVIKPVPGTGDFNLAKQSKVMQPVEAV
CCEEEHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHHHHCCHHHCC
>Mature Secondary Structure
MEHIGNDAASPDGPSEWHSIDWKLVMEFVGKAQMRIAQAEQEKGFRRVARLTRSLIRSWQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKALAVRRVTENQGKRTSGVDCVLWDTPTKKWNAISCLNPKGYRARPLRRAYIPKADGKE
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCC
RPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGRSTHDARSQLFVCLSKKASAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEHHCCCCCCCC
WVLDADIAGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
EEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
LANITLNGLETGLMQFLREKLGVNQAGKVKVNLVRYADDFVVTGSSKDFLETTVRPWIVE
HHHEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEECCCHHHHHHHHHHHHHH
FLRERGLTLSTEKTRIVHIDQGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKEEIAGS
HHHHCCCEEECCCEEEEEEECCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHH
LSKVPVETLIKRLNPILKGWAQYHKGTVAKQIFSKVDSLIYWRLMRWGMRTHPRKTAGWV
HHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHH
YGHYWKQCGSRKQFAGLQDDPSGGDERIPLPLYRLSDMKIVRHIKVKGDYNPFHPDWVAD
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEECCCCCCCCCCCCC
GEKLRVRRMGETIWSAQRASLWFDQGGKCALCQQEIDMAEENMDDHHIVYRQLGGSDALS
CHHHHHHHHHHHHHHHHHHHEEECCCCCEEECHHHHHHHHHCCCCHHHHHHHCCCCHHHC
NRVLLHPICHRRVHALGLKVIKPVPGTGDFNLAKQSKVMQPVEAV
CCEEEHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]