| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gsiB [H]
Identifier: 91790239
GI number: 91790239
Start: 4649496
End: 4651121
Strand: Reverse
Name: gsiB [H]
Synonym: Bpro_4406
Alternate gene names: 91790239
Gene position: 4651121-4649496 (Counterclockwise)
Preceding gene: 91790240
Following gene: 91790238
Centisome position: 89.44
GC content: 58.43
Gene sequence:
>1626_bases ATGGATCGTCGTGATTTCGTCAAAGGCGCAGCAGCTCTTACTGCAACCGCCGCCGCTGGCATCGGGCAAGCGCAACAAGC CGGGGCGCCAGTTGCGAAGCGCTCAATTCTGACAGCTACGGCGCAGTTCGACCCGGCCCGCCCGGAGATTGCCCGGGTTG TCGCACAGTCCTGCAAGTCGCTCGGGTGGGAGGTTGAAGCCAATCCCATCGACTACAACCAGGGCATCACGAAAGTGATC AACGAGCATGACTTCGAGATGTTCCTGGTCTTTCTTCCGGGTACGGCCATCCGCATCGACCCCGACTTCTTCATTCGCAG CATTCACCACTCCACAGAGCATAAGCGCGGCGGCTTCAACTGGGCGGGCTACAAGAACGACCGTGTAGACGCGCTGGCAA CCGTGCAGAGCCGCTTGATGAAGATCGACGACCGTAGGAAGCCGGTGCTCGAAGCGCAGGAAACCATCTTCCAGGACCAG CCTGGAACCGTGCTGGCCTATACGCAGATGACGATGGCTCATCGTTCGGACAAGCTCAAGGGCCTGGTGCCGCAGCTCGG CGAGGGAATCGGCGGCTTTTGGTCTGACGTCAACATGGAAGTGGCGGGCGACGGATTCTCGCGCACCGGTTCGAATGCGG ACGTCAAGCATCTGAATCCAGTTGCGGTCAATGACTCCATGGAATTCATGGAGCTTTCCATGATCTACGACCGACTTTTC CGCCTTGGGCCCGACGGCAAACCTGTACCTTGGGCAGCCTCCGGAATGAAGTTGGTGGATGACAAAACCATCGATCTGAC GATCCGCTCGGGTATGCGCTGGCATGACGGTAAGCCAGTGACGGCCGAGGATGTCAAGTTCACCTTCGACTATCACAAGA AGTGGAAGGCGCCATTTTTCCTTGCCGCGCTCAATAATGTCGTCGCGGTGGAGCTCCCGAGCCCCAATACGGTGCGCATC CGACTCGAAAATCCATCGGCTCCCTTTGTCTCCAACGTGATGGCGACGATGTTTCTTCTCCCCAAACACATTTGGGAAGG CATCCCGGAGAAGGTCGGCATTGACGATCCGCTCAAATTCCCCAACGACAAGCCGGTCGGTAGCGGACCGTTCAAGTTCG ACTACTGGCGGCGCGGTTCGGAACTCAAGGTCACCGCGTTCCGCGAGCACTTCAACCCACCCAAGTGCGCAGGCATCATC CGCATTACTTACGGCAGCCATGACGCGTTGGCCGCCGCCATCGAGAAGGGGGAATGCGACCGCTCACGCTACATCTTGTC GCCAGCCCTTGTCGATCGTATAAAGAACGTGAAGAACGTAGTGGCCAAGGGCTATCCCAGCCACGGCCTCTATCACCTTG CGTACAACAACAAGATCAAGCCTTTCGACGATCCCGCCTTCCGCCAGGCGCTCAACCATGTGATGCCGCGCAAGATGATC TCGGAGCTGATCCTGCTCGGGTACGCCGATCCCGGCGCATCAATTATTTCGCCCATCAGCACGTTTTGGCACAACCCGGC TGTCAAGGTTCCGGCTGAAGACGTGAAGAAGGCGCGCGACATTCTTGCGAAGGCCGGTTACGGATGGGACGCGCAAGGCA AATTGCTCTCTCCCCGCGGCAAATGA
Upstream 100 bases:
>100_bases CTAGATAACGTTACTCCTTGCAACATGGACATGTGAAGTCTGCATTCATAGACTTGTCACATATCGGGCTTGGTGGCCTG GGAAACTTAAGGAGACAAGA
Downstream 100 bases:
>100_bases TCTACGGTGCATTGTGGGCGGATGACGCCCCTACTCGAAACCGCGGCCATCAGGGAGGCTCGCGATGACTGCGTATATCC TGCGCCGTCTCTTGTCGGCA
Product: twin-arginine translocation pathway signal protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 541; Mature: 541
Protein sequence:
>541_residues MDRRDFVKGAAALTATAAAGIGQAQQAGAPVAKRSILTATAQFDPARPEIARVVAQSCKSLGWEVEANPIDYNQGITKVI NEHDFEMFLVFLPGTAIRIDPDFFIRSIHHSTEHKRGGFNWAGYKNDRVDALATVQSRLMKIDDRRKPVLEAQETIFQDQ PGTVLAYTQMTMAHRSDKLKGLVPQLGEGIGGFWSDVNMEVAGDGFSRTGSNADVKHLNPVAVNDSMEFMELSMIYDRLF RLGPDGKPVPWAASGMKLVDDKTIDLTIRSGMRWHDGKPVTAEDVKFTFDYHKKWKAPFFLAALNNVVAVELPSPNTVRI RLENPSAPFVSNVMATMFLLPKHIWEGIPEKVGIDDPLKFPNDKPVGSGPFKFDYWRRGSELKVTAFREHFNPPKCAGII RITYGSHDALAAAIEKGECDRSRYILSPALVDRIKNVKNVVAKGYPSHGLYHLAYNNKIKPFDDPAFRQALNHVMPRKMI SELILLGYADPGASIISPISTFWHNPAVKVPAEDVKKARDILAKAGYGWDAQGKLLSPRGK
Sequences:
>Translated_541_residues MDRRDFVKGAAALTATAAAGIGQAQQAGAPVAKRSILTATAQFDPARPEIARVVAQSCKSLGWEVEANPIDYNQGITKVI NEHDFEMFLVFLPGTAIRIDPDFFIRSIHHSTEHKRGGFNWAGYKNDRVDALATVQSRLMKIDDRRKPVLEAQETIFQDQ PGTVLAYTQMTMAHRSDKLKGLVPQLGEGIGGFWSDVNMEVAGDGFSRTGSNADVKHLNPVAVNDSMEFMELSMIYDRLF RLGPDGKPVPWAASGMKLVDDKTIDLTIRSGMRWHDGKPVTAEDVKFTFDYHKKWKAPFFLAALNNVVAVELPSPNTVRI RLENPSAPFVSNVMATMFLLPKHIWEGIPEKVGIDDPLKFPNDKPVGSGPFKFDYWRRGSELKVTAFREHFNPPKCAGII RITYGSHDALAAAIEKGECDRSRYILSPALVDRIKNVKNVVAKGYPSHGLYHLAYNNKIKPFDDPAFRQALNHVMPRKMI SELILLGYADPGASIISPISTFWHNPAVKVPAEDVKKARDILAKAGYGWDAQGKLLSPRGK >Mature_541_residues MDRRDFVKGAAALTATAAAGIGQAQQAGAPVAKRSILTATAQFDPARPEIARVVAQSCKSLGWEVEANPIDYNQGITKVI NEHDFEMFLVFLPGTAIRIDPDFFIRSIHHSTEHKRGGFNWAGYKNDRVDALATVQSRLMKIDDRRKPVLEAQETIFQDQ PGTVLAYTQMTMAHRSDKLKGLVPQLGEGIGGFWSDVNMEVAGDGFSRTGSNADVKHLNPVAVNDSMEFMELSMIYDRLF RLGPDGKPVPWAASGMKLVDDKTIDLTIRSGMRWHDGKPVTAEDVKFTFDYHKKWKAPFFLAALNNVVAVELPSPNTVRI RLENPSAPFVSNVMATMFLLPKHIWEGIPEKVGIDDPLKFPNDKPVGSGPFKFDYWRRGSELKVTAFREHFNPPKCAGII RITYGSHDALAAAIEKGECDRSRYILSPALVDRIKNVKNVVAKGYPSHGLYHLAYNNKIKPFDDPAFRQALNHVMPRKMI SELILLGYADPGASIISPISTFWHNPAVKVPAEDVKKARDILAKAGYGWDAQGKLLSPRGK
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1789966, Length=321, Percent_Identity=27.1028037383178, Blast_Score=99, Evalue=9e-22, Organism=Escherichia coli, GI1787052, Length=341, Percent_Identity=26.6862170087977, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1787762, Length=297, Percent_Identity=25.5892255892256, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI87082063, Length=201, Percent_Identity=30.8457711442786, Blast_Score=65, Evalue=9e-12,
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 60047; Mature: 60047
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRRDFVKGAAALTATAAAGIGQAQQAGAPVAKRSILTATAQFDPARPEIARVVAQSCKS CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHH LGWEVEANPIDYNQGITKVINEHDFEMFLVFLPGTAIRIDPDFFIRSIHHSTEHKRGGFN CCCEEECCCCCCCCCHHHHHCCCCEEEEEEEECCCEEEECHHHHHHHHHHHHHCCCCCCC WAGYKNDRVDALATVQSRLMKIDDRRKPVLEAQETIFQDQPGTVLAYTQMTMAHRSDKLK CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHH GLVPQLGEGIGGFWSDVNMEVAGDGFSRTGSNADVKHLNPVAVNDSMEFMELSMIYDRLF HHHHHHCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH RLGPDGKPVPWAASGMKLVDDKTIDLTIRSGMRWHDGKPVTAEDVKFTFDYHKKWKAPFF HCCCCCCCCCCCCCCCEEECCCEEEEEEECCCEECCCCCCCHHCEEEEEEHHHCCCCCEE LAALNNVVAVELPSPNTVRIRLENPSAPFVSNVMATMFLLPKHIWEGIPEKVGIDDPLKF EEECCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC PNDKPVGSGPFKFDYWRRGSELKVTAFREHFNPPKCAGIIRITYGSHDALAAAIEKGECD CCCCCCCCCCCEEHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCCC RSRYILSPALVDRIKNVKNVVAKGYPSHGLYHLAYNNKIKPFDDPAFRQALNHVMPRKMI CCCEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH SELILLGYADPGASIISPISTFWHNPAVKVPAEDVKKARDILAKAGYGWDAQGKLLSPRG HHHHHEECCCCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC K C >Mature Secondary Structure MDRRDFVKGAAALTATAAAGIGQAQQAGAPVAKRSILTATAQFDPARPEIARVVAQSCKS CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHH LGWEVEANPIDYNQGITKVINEHDFEMFLVFLPGTAIRIDPDFFIRSIHHSTEHKRGGFN CCCEEECCCCCCCCCHHHHHCCCCEEEEEEEECCCEEEECHHHHHHHHHHHHHCCCCCCC WAGYKNDRVDALATVQSRLMKIDDRRKPVLEAQETIFQDQPGTVLAYTQMTMAHRSDKLK CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHH GLVPQLGEGIGGFWSDVNMEVAGDGFSRTGSNADVKHLNPVAVNDSMEFMELSMIYDRLF HHHHHHCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH RLGPDGKPVPWAASGMKLVDDKTIDLTIRSGMRWHDGKPVTAEDVKFTFDYHKKWKAPFF HCCCCCCCCCCCCCCCEEECCCEEEEEEECCCEECCCCCCCHHCEEEEEEHHHCCCCCEE LAALNNVVAVELPSPNTVRIRLENPSAPFVSNVMATMFLLPKHIWEGIPEKVGIDDPLKF EEECCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC PNDKPVGSGPFKFDYWRRGSELKVTAFREHFNPPKCAGIIRITYGSHDALAAAIEKGECD CCCCCCCCCCCEEHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCCC RSRYILSPALVDRIKNVKNVVAKGYPSHGLYHLAYNNKIKPFDDPAFRQALNHVMPRKMI CCCEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH SELILLGYADPGASIISPISTFWHNPAVKVPAEDVKKARDILAKAGYGWDAQGKLLSPRG HHHHHEECCCCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA