| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790222
Identifier: 91790222
GI number: 91790222
Start: 4630570
End: 4631688
Strand: Reverse
Name: 91790222
Synonym: Bpro_4388
Alternate gene names: NA
Gene position: 4631688-4630570 (Counterclockwise)
Preceding gene: 91790223
Following gene: 91790220
Centisome position: 89.07
GC content: 54.6
Gene sequence:
>1119_bases ATGAAAATGAATCCAAGCTTAGTTCTCATTCTTTCCCTGCTAGGGATGCCACTAGCGCATGCTGTTGAAGTTGTTGTCGG GCAGGTCGGTCCGATGTCAGGCTTGGATGCCAATCAAGGCAGGGCATATGCGGTTGGTATGCAGCTGATGTTTAACAATG TCAACAAGGCCGGCGGCATCAACGGCCACACGTTCGCCCTGGTTCGCAAAGATGATGGTGGGCGGGCGGAGGATACTATT AGTGCCACCAAGCAGTTGCTGACTGAAGAAAAGCCATTGGTTTTGGCTGGATTTTTTGGCAACCGCAACATCACAGATTT GGTGAGTTCAGGCGTGCTCGAAGCAAACTCCATCGCCGTCGTGGGCTACCGCACGACAGAAATGCGTCCCGAGACCCCGT TGCTGTACAACGTGCGGGCCAGCTTACGTGACGAGATCCACAAAATTACCGAACACCTGGCCACTGTCGGTATCAACCGA ATTGGCCTTTTTTACGAAGACGGTCCGGGTGTTGCCTCGCTGCTTGCTGCCACCGACGAAGCAGTCAAGAAGACTCGCGG CAATGTCATTTCCAAAGCATCCTATCCAGCTGGGACGGCTCGCGTTACGCCGGCTGTTGAGGTGTTCGTTAAAACCACAC CGCAGGCCATTATCATGGTCGCAAGCGGGGCGGCCGCAGCCGCCTTTATTGAGCAGTACCGGGCGGCTGGTGGTGCATCA CAGTTGCTTTCGCACTCAGGGGCCGACATCGAGCAGTTATCAAAGCGACTGAGCGAGGAACAATTGCGGGGTGTGGCAAT TGCGCAAGTTGTGCCCAATCCGTACAAGATCTCAGTGCGCCTGGCCAAGGAGTTCAGCGATACGATCGCTAAAACTCAGA GTCTAGAGGTGCCGGTGAGCTATACCATGATGGAAGGCTATATCGCAGCCAAGGTCATCGTGGAAGCCGTGCGTCGACAA GGAAAAAATCCAAATCGCTCAGGGTTTGTGACAGCGCTGGATAGCATGGATAGCTATGACCTCGGCGGCTACCTGGTGAG CTTCAAGCCGGGAATACGCTCCGGCGCGAAATTCGTGGAGCTGTCCATCATCAGTGGCAGCGGGAAAATACGTCAGTAG
Upstream 100 bases:
>100_bases TACTGAAAAGTGGGCAAAACTGGTGCGCAGTTCTGGTGCAACTGTGGATTGATTTGTGGCTACGCATATTGATCTCTACG CTGTTGGGATATGAAGTTTT
Downstream 100 bases:
>100_bases ATCGAAGAGTTTCGATCTGGCTGTTTGCTTGTTGCTGAATCGCACTGAAGCCTGACAATCTTGCCATTAAATCTTGACCC ACACTTGGAGTGAACCCCTC
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: Lipoprotein; Abc-Type Branched-Chain Amino Acid Transport Systems; ABC Branched-Chain Amino Acid Transporter
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MKMNPSLVLILSLLGMPLAHAVEVVVGQVGPMSGLDANQGRAYAVGMQLMFNNVNKAGGINGHTFALVRKDDGGRAEDTI SATKQLLTEEKPLVLAGFFGNRNITDLVSSGVLEANSIAVVGYRTTEMRPETPLLYNVRASLRDEIHKITEHLATVGINR IGLFYEDGPGVASLLAATDEAVKKTRGNVISKASYPAGTARVTPAVEVFVKTTPQAIIMVASGAAAAAFIEQYRAAGGAS QLLSHSGADIEQLSKRLSEEQLRGVAIAQVVPNPYKISVRLAKEFSDTIAKTQSLEVPVSYTMMEGYIAAKVIVEAVRRQ GKNPNRSGFVTALDSMDSYDLGGYLVSFKPGIRSGAKFVELSIISGSGKIRQ
Sequences:
>Translated_372_residues MKMNPSLVLILSLLGMPLAHAVEVVVGQVGPMSGLDANQGRAYAVGMQLMFNNVNKAGGINGHTFALVRKDDGGRAEDTI SATKQLLTEEKPLVLAGFFGNRNITDLVSSGVLEANSIAVVGYRTTEMRPETPLLYNVRASLRDEIHKITEHLATVGINR IGLFYEDGPGVASLLAATDEAVKKTRGNVISKASYPAGTARVTPAVEVFVKTTPQAIIMVASGAAAAAFIEQYRAAGGAS QLLSHSGADIEQLSKRLSEEQLRGVAIAQVVPNPYKISVRLAKEFSDTIAKTQSLEVPVSYTMMEGYIAAKVIVEAVRRQ GKNPNRSGFVTALDSMDSYDLGGYLVSFKPGIRSGAKFVELSIISGSGKIRQ >Mature_372_residues MKMNPSLVLILSLLGMPLAHAVEVVVGQVGPMSGLDANQGRAYAVGMQLMFNNVNKAGGINGHTFALVRKDDGGRAEDTI SATKQLLTEEKPLVLAGFFGNRNITDLVSSGVLEANSIAVVGYRTTEMRPETPLLYNVRASLRDEIHKITEHLATVGINR IGLFYEDGPGVASLLAATDEAVKKTRGNVISKASYPAGTARVTPAVEVFVKTTPQAIIMVASGAAAAAFIEQYRAAGGAS QLLSHSGADIEQLSKRLSEEQLRGVAIAQVVPNPYKISVRLAKEFSDTIAKTQSLEVPVSYTMMEGYIAAKVIVEAVRRQ GKNPNRSGFVTALDSMDSYDLGGYLVSFKPGIRSGAKFVELSIISGSGKIRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39597; Mature: 39597
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMNPSLVLILSLLGMPLAHAVEVVVGQVGPMSGLDANQGRAYAVGMQLMFNNVNKAGGI CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCC NGHTFALVRKDDGGRAEDTISATKQLLTEEKPLVLAGFFGNRNITDLVSSGVLEANSIAV CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCEECCCEEE VGYRTTEMRPETPLLYNVRASLRDEIHKITEHLATVGINRIGLFYEDGPGVASLLAATDE EEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCHHHEEEEEECCCCHHHHHHHHHH AVKKTRGNVISKASYPAGTARVTPAVEVFVKTTPQAIIMVASGAAAAAFIEQYRAAGGAS HHHHHCCCEEECCCCCCCCCCCCHHEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCHH QLLSHSGADIEQLSKRLSEEQLRGVAIAQVVPNPYKISVRLAKEFSDTIAKTQSLEVPVS HHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCEE YTMMEGYIAAKVIVEAVRRQGKNPNRSGFVTALDSMDSYDLGGYLVSFKPGIRSGAKFVE HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEE LSIISGSGKIRQ EEEEECCCCCCC >Mature Secondary Structure MKMNPSLVLILSLLGMPLAHAVEVVVGQVGPMSGLDANQGRAYAVGMQLMFNNVNKAGGI CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCC NGHTFALVRKDDGGRAEDTISATKQLLTEEKPLVLAGFFGNRNITDLVSSGVLEANSIAV CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCEECCCEEE VGYRTTEMRPETPLLYNVRASLRDEIHKITEHLATVGINRIGLFYEDGPGVASLLAATDE EEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCHHHEEEEEECCCCHHHHHHHHHH AVKKTRGNVISKASYPAGTARVTPAVEVFVKTTPQAIIMVASGAAAAAFIEQYRAAGGAS HHHHHCCCEEECCCCCCCCCCCCHHEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCHH QLLSHSGADIEQLSKRLSEEQLRGVAIAQVVPNPYKISVRLAKEFSDTIAKTQSLEVPVS HHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCEE YTMMEGYIAAKVIVEAVRRQGKNPNRSGFVTALDSMDSYDLGGYLVSFKPGIRSGAKFVE HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEE LSIISGSGKIRQ EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA