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The map label for this gene is potC [H]

Identifier: 91790212

GI number: 91790212

Start: 4618925

End: 4619722

Strand: Reverse

Name: potC [H]

Synonym: Bpro_4377

Alternate gene names: 91790212

Gene position: 4619722-4618925 (Counterclockwise)

Preceding gene: 91790213

Following gene: 91790211

Centisome position: 88.84

GC content: 65.91

Gene sequence:

>798_bases
ATGCGCAAGAACGGTTTCTTCTCATTGCTCTACCACGCCCTGTTCATCGGCTTCATCATCGCGCCACTGGTGGTGGTGAT
GCTGGTGTCCTTCACCAGCAAGGGCTTCATCTCCATGCCTTTCTCCGAAGGTTTTTCGCTGCGCTGGTTCCGCGCCATCT
TCGACTCGACCGAGATCATCCGCGCCTTCTGGTTCTCGCTCTGGCTGGGCCTGGCCTCGGCCACCGTCGCCATCGCGCTG
GCCGTGCCGGGGGCGCTGGCGCTGACCCGCTACAGGTTCGCCGGCCGCGGCGTGCTGGTGGGCTTTTTCATGTCGCCGCT
GATGATCCCGCACGTGGTGCTGGGCGTGGCCTTCCTGCGCTTCTTCACGACGATCAACGTGACCGGCTCATTCGCCTGGC
TGGCCGCCACCCACGTCATCGTGATCATTCCCTATGCGCTGCGGCTGGTGCTGTCGTCGGCCACCGGGCTGGACCGCGAT
GCCGAGCGCGCCGCGCTGTCGCTGGGGGCTTCCCCTTTCACCGCCTTCCGGCGCGTGGTGCTGCCGCTCATCCTGCCGGG
CGTGGCCGGCGGCTGGATGCTGGCTTTCATTCAGAGCTTTGACGAGCTCACGATGACGGTCTTCGTCGCCACGCCGGGCA
CCACCACGCTGCCCGTCGCCATGTACAACCAGATCGCCCAGACCATAGACCCCCTGGTGGCCGCGGTGGCCACCGTGCTC
ATCGTCGGCACGCTCGTCGTGATGGTCGCCATGGACCGCCTCGTCGGCCTGGACCGCGTGCTGATCGGCAAGAACTGA

Upstream 100 bases:

>100_bases
GCCAACGTGCTCATCATCCTCGGCGCCAACCGCTGGGTGGAGCGCCGCTTCAGCCAGGTCTTCGACGCCTGAGCACCCCA
GAACATCCAAGGACTTCCCC

Downstream 100 bases:

>100_bases
ACCCCGCATGGCGAACACCACAACCCCCAACAACAATAGCGACGTCATCGTCATCGGCGGCGGTCTCGTCGGCAGCGCCG
TGGCTTATGGCCTGGCGCGC

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRKNGFFSLLYHALFIGFIIAPLVVVMLVSFTSKGFISMPFSEGFSLRWFRAIFDSTEIIRAFWFSLWLGLASATVAIAL
AVPGALALTRYRFAGRGVLVGFFMSPLMIPHVVLGVAFLRFFTTINVTGSFAWLAATHVIVIIPYALRLVLSSATGLDRD
AERAALSLGASPFTAFRRVVLPLILPGVAGGWMLAFIQSFDELTMTVFVATPGTTTLPVAMYNQIAQTIDPLVAAVATVL
IVGTLVVMVAMDRLVGLDRVLIGKN

Sequences:

>Translated_265_residues
MRKNGFFSLLYHALFIGFIIAPLVVVMLVSFTSKGFISMPFSEGFSLRWFRAIFDSTEIIRAFWFSLWLGLASATVAIAL
AVPGALALTRYRFAGRGVLVGFFMSPLMIPHVVLGVAFLRFFTTINVTGSFAWLAATHVIVIIPYALRLVLSSATGLDRD
AERAALSLGASPFTAFRRVVLPLILPGVAGGWMLAFIQSFDELTMTVFVATPGTTTLPVAMYNQIAQTIDPLVAAVATVL
IVGTLVVMVAMDRLVGLDRVLIGKN
>Mature_265_residues
MRKNGFFSLLYHALFIGFIIAPLVVVMLVSFTSKGFISMPFSEGFSLRWFRAIFDSTEIIRAFWFSLWLGLASATVAIAL
AVPGALALTRYRFAGRGVLVGFFMSPLMIPHVVLGVAFLRFFTTINVTGSFAWLAATHVIVIIPYALRLVLSSATGLDRD
AERAALSLGASPFTAFRRVVLPLILPGVAGGWMLAFIQSFDELTMTVFVATPGTTTLPVAMYNQIAQTIDPLVAAVATVL
IVGTLVVMVAMDRLVGLDRVLIGKN

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=217, Percent_Identity=32.7188940092166, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787081, Length=233, Percent_Identity=30.9012875536481, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1787714, Length=236, Percent_Identity=30.5084745762712, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788764, Length=168, Percent_Identity=27.3809523809524, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28728; Mature: 28728

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]