Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is ooxB [H]

Identifier: 91790211

GI number: 91790211

Start: 4617766

End: 4618917

Strand: Reverse

Name: ooxB [H]

Synonym: Bpro_4376

Alternate gene names: 91790211

Gene position: 4618917-4617766 (Counterclockwise)

Preceding gene: 91790212

Following gene: 91790210

Centisome position: 88.82

GC content: 68.84

Gene sequence:

>1152_bases
ATGGCGAACACCACAACCCCCAACAACAATAGCGACGTCATCGTCATCGGCGGCGGTCTCGTCGGCAGCGCCGTGGCTTA
TGGCCTGGCGCGCCAAGGCGCCCAGGTCACCCTGCTCGACGAAGGCGACCAGGCCTTCCGCGCCTCACGCGGCAACTTCG
GCTTGGTCTGGGTGCAGGGAAAAGGCTACGGCATGACGCCGTATGCCCGCTGGACGCGATCTTCAGCCGCTCTCTGGCCG
CAGCTTGCACAGGCGCTGCTGGATGACACCGACATCGATGTGCGCCTGGAGCAGCCCGGCGGCTTCTGCTTCACCTTCTC
CGACGAAGAGCAGGAGGAGCGCCGAAAACGCATGCAGGCCATCCAGGACGAACTCGCGGGCGACTATCCCTTCGAGATGC
TGGACCGGCAGGAGGTCATCGCCCGCGTGCCGGCCCTGGGCCCCGCCGTGACCGGCGCAAGCTACACGCCCATGGACGGC
CACACCAACCCGCTCAAGCTGCTGCGCGCCCTGCACGAGGCCAACTTCAAGCGCCGCGTCCACTACGTCAGCGGCCAGCC
GGTGAAAAGCGTGGTGGCCCAGCCGCGCGCCGGCGGCTGCCTTTTTACCGTCGAAGGCCGCTGGCAGGCGCCGCGTATGG
TTCTCGCCGCCGGCCTCGGCAACCGGGGCCTGGCCGAGCGGCTCGGCCTGCATGCGCCCGTGGTGCCCAACCGCGGCCAG
GTGCTCATCGGCGAGCGCACCGCGCGCTTTCTGGACTACCCCACGCTCAATGTGCGGCAGACCGACGAAGGCACCATCCA
GCTCGGCGACTCGATGGAAGAGGTGGGCTTCGACGACAACGTCACGACCGGCGTGCTGGCCAACATCGCCCAGCGCGGCG
TGCGCACCTTTCCTGTGCTCGCCGGCCTGCGCCTCGTGCGGGCCTGGAGCGCCCTGCGTGTCATGAGCCCCGACGGCTTT
CCCATCTACGACGAGTCGACCCGGCACCCCGGCGCTTTCGTCACCACCTGCCACAGCGGCGTCACGCTCGCTGCCGCGCA
CGCATTCCGCGTCGCACCCTGGGTCGGCGGTGCGCCGCGGCCCGAAGAGATCGGCGTCTTCCAGGGCGACCGTTTTTTGA
ACCCCAACTACCGCCCCAGCCATGCCCACTGA

Upstream 100 bases:

>100_bases
GTGGCCACCGTGCTCATCGTCGGCACGCTCGTCGTGATGGTCGCCATGGACCGCCTCGTCGGCCTGGACCGCGTGCTGAT
CGGCAAGAACTGAACCCCGC

Downstream 100 bases:

>100_bases
TTCCTTCTTCCAACCGCTGGCCCAGGCCGGCGCCTCCACGGCGGCGACCATCGCCGTAACCCTCAACGGCCAGCCGCTGC
AGGTGCCCGTGGGCTCCAGC

Product: FAD dependent oxidoreductase

Products: Dihydroxyacetone phosphate; Ubiquinol-8 [C]

Alternate protein names: Octopine oxidase subunit B [H]

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MANTTTPNNNSDVIVIGGGLVGSAVAYGLARQGAQVTLLDEGDQAFRASRGNFGLVWVQGKGYGMTPYARWTRSSAALWP
QLAQALLDDTDIDVRLEQPGGFCFTFSDEEQEERRKRMQAIQDELAGDYPFEMLDRQEVIARVPALGPAVTGASYTPMDG
HTNPLKLLRALHEANFKRRVHYVSGQPVKSVVAQPRAGGCLFTVEGRWQAPRMVLAAGLGNRGLAERLGLHAPVVPNRGQ
VLIGERTARFLDYPTLNVRQTDEGTIQLGDSMEEVGFDDNVTTGVLANIAQRGVRTFPVLAGLRLVRAWSALRVMSPDGF
PIYDESTRHPGAFVTTCHSGVTLAAAHAFRVAPWVGGAPRPEEIGVFQGDRFLNPNYRPSHAH

Sequences:

>Translated_383_residues
MANTTTPNNNSDVIVIGGGLVGSAVAYGLARQGAQVTLLDEGDQAFRASRGNFGLVWVQGKGYGMTPYARWTRSSAALWP
QLAQALLDDTDIDVRLEQPGGFCFTFSDEEQEERRKRMQAIQDELAGDYPFEMLDRQEVIARVPALGPAVTGASYTPMDG
HTNPLKLLRALHEANFKRRVHYVSGQPVKSVVAQPRAGGCLFTVEGRWQAPRMVLAAGLGNRGLAERLGLHAPVVPNRGQ
VLIGERTARFLDYPTLNVRQTDEGTIQLGDSMEEVGFDDNVTTGVLANIAQRGVRTFPVLAGLRLVRAWSALRVMSPDGF
PIYDESTRHPGAFVTTCHSGVTLAAAHAFRVAPWVGGAPRPEEIGVFQGDRFLNPNYRPSHAH
>Mature_382_residues
ANTTTPNNNSDVIVIGGGLVGSAVAYGLARQGAQVTLLDEGDQAFRASRGNFGLVWVQGKGYGMTPYARWTRSSAALWPQ
LAQALLDDTDIDVRLEQPGGFCFTFSDEEQEERRKRMQAIQDELAGDYPFEMLDRQEVIARVPALGPAVTGASYTPMDGH
TNPLKLLRALHEANFKRRVHYVSGQPVKSVVAQPRAGGCLFTVEGRWQAPRMVLAAGLGNRGLAERLGLHAPVVPNRGQV
LIGERTARFLDYPTLNVRQTDEGTIQLGDSMEEVGFDDNVTTGVLANIAQRGVRTFPVLAGLRLVRAWSALRVMSPDGFP
IYDESTRHPGAFVTTCHSGVTLAAAHAFRVAPWVGGAPRPEEIGVFQGDRFLNPNYRPSHAH

Specific function: Oxidative cleavage of octopine into L-arginine and pyruvate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Loosely Bound To The Cytoplasm Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Drosophila melanogaster, GI20130091, Length=279, Percent_Identity=27.2401433691756, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.1.99.5 [C]

Molecular weight: Translated: 41700; Mature: 41568

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTTTPNNNSDVIVIGGGLVGSAVAYGLARQGAQVTLLDEGDQAFRASRGNFGLVWVQG
CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCEEEEEEEC
KGYGMTPYARWTRSSAALWPQLAQALLDDTDIDVRLEQPGGFCFTFSDEEQEERRKRMQA
CCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHH
IQDELAGDYPFEMLDRQEVIARVPALGPAVTGASYTPMDGHTNPLKLLRALHEANFKRRV
HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHEEE
HYVSGQPVKSVVAQPRAGGCLFTVEGRWQAPRMVLAAGLGNRGLAERLGLHAPVVPNRGQ
EEECCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCE
VLIGERTARFLDYPTLNVRQTDEGTIQLGDSMEEVGFDDNVTTGVLANIAQRGVRTFPVL
EEECCCHHHHHCCCCCEEEECCCCEEEECCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
AGLRLVRAWSALRVMSPDGFPIYDESTRHPGAFVTTCHSGVTLAAAHAFRVAPWVGGAPR
HHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHEECCCCCCCCC
PEEIGVFQGDRFLNPNYRPSHAH
CHHCCEECCCEECCCCCCCCCCC
>Mature Secondary Structure 
ANTTTPNNNSDVIVIGGGLVGSAVAYGLARQGAQVTLLDEGDQAFRASRGNFGLVWVQG
CCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCEEEEEEEC
KGYGMTPYARWTRSSAALWPQLAQALLDDTDIDVRLEQPGGFCFTFSDEEQEERRKRMQA
CCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHH
IQDELAGDYPFEMLDRQEVIARVPALGPAVTGASYTPMDGHTNPLKLLRALHEANFKRRV
HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHEEE
HYVSGQPVKSVVAQPRAGGCLFTVEGRWQAPRMVLAAGLGNRGLAERLGLHAPVVPNRGQ
EEECCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCE
VLIGERTARFLDYPTLNVRQTDEGTIQLGDSMEEVGFDDNVTTGVLANIAQRGVRTFPVL
EEECCCHHHHHCCCCCEEEECCCCEEEECCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
AGLRLVRAWSALRVMSPDGFPIYDESTRHPGAFVTTCHSGVTLAAAHAFRVAPWVGGAPR
HHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHEECCCCCCCCC
PEEIGVFQGDRFLNPNYRPSHAH
CHHCCEECCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Glycerol 3-phosphate; Ubiquinone-8 [C]

Specific reaction: Glycerol 3-phosphate + Ubiquinone-8 --> Dihydroxyacetone phosphate + Ubiquinol-8 [C]

General reaction: Redox reaction [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8045881 [H]